Alternatives and similar repositories for PyPHLAWD

Users that are interested in PyPHLAWD are comparing it to the libraries listed below

• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆15Updated last year
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆17Updated 3 years ago
• macroevolution / bamm
  A program for multimodel inference on speciation and trait evolution
  ☆35Updated 8 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆27Updated 3 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆43Updated 4 months ago
• computations / root_digger
  A tool to root phylogenies
  ☆23Updated last year
• helixcn / phylotools
  Phylogenetic tools for Eco-phylogenetics
  ☆13Updated last year
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 5 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• duchene / phylomad
  ☆19Updated last year
• blackrim / phyutility
  ☆22Updated 11 years ago
• TBooker / PicMin
  ☆12Updated 2 years ago
• larssnip / micropan
  R package for microbial pangenomics
  ☆24Updated 3 years ago
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆16Updated 7 months ago
• ballesterus / Utensils
  Simple scripts for concatenate alignments and rename terminals for phylogenetics
  ☆22Updated 3 years ago
• marekborowiec / spruceup
  spruceup
  ☆25Updated 3 months ago
• MaikeMorrison / FSTruct
  ☆13Updated 2 years ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆16Updated 2 years ago
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆22Updated last year
• mossmatters / MJPythonNotebooks
  Visualizing gene tree conflict using Phyparts, and ETE3
  ☆14Updated 2 years ago
• hemstrow / snpR
  ☆31Updated 2 months ago
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated last year
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆20Updated 4 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 8 years ago
• Sanrrone / multiGenomicContext
  multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
  ☆10Updated 3 years ago
• BenoitMorel / Asteroid
  ☆15Updated last year
• rbouckaert / starbeast3
  ☆20Updated 4 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆38Updated last year
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• dportik / SuperCRUNCH
  A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…
  ☆44Updated last year