Alternatives and similar repositories for PyPHLAWD

Users that are interested in PyPHLAWD are comparing it to the libraries listed below

• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆13Updated last year
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• duchene / phylomad
  ☆19Updated last year
• BenoitMorel / Asteroid
  ☆14Updated last year
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆29Updated last year
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated last year
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆16Updated 2 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆41Updated 9 months ago
• marekborowiec / spruceup
  spruceup
  ☆24Updated 10 months ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆49Updated last month
• mongiardino / chronospace
  que paquete
  ☆9Updated 11 months ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆32Updated 3 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆16Updated 3 years ago
• bcbc-group / Botany2020NMGWorkshop
  A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop
  ☆15Updated 4 years ago
• macroevolution / bamm
  A program for multimodel inference on speciation and trait evolution
  ☆33Updated 7 years ago
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 4 years ago
• blackrim / phyutility
  ☆22Updated 11 years ago
• nstenz / TICR
  ☆26Updated 4 years ago
• hemstrow / snpR
  ☆30Updated 3 weeks ago
• computations / root_digger
  A tool to root phylogenies
  ☆20Updated 9 months ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆18Updated last year
• lmcai / PhyloHerb
  PHYLOgenomic analysis pipeline for HERBarium specimens
  ☆17Updated last month
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 2 months ago
• mahsa-mousavi / eDNAFlow
  ☆21Updated 2 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 4 years ago
• gehara / PipeMaster
  An R Package to build and simulate coalescent models
  ☆20Updated last year
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆16Updated last month
• rbouckaert / starbeast3
  ☆18Updated 9 months ago