R package for analysis of hybrids and hybrid zones
☆21Dec 30, 2023Updated 2 years ago
Alternatives and similar repositories for gghybrid
Users that are interested in gghybrid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year
- Calculate Hybrid Index and Heterozygosity from SNP data☆16Sep 2, 2025Updated 6 months ago
- Software package for estimating fine-scale recombination rate.☆17Jun 8, 2021Updated 4 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆46Mar 7, 2024Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- plumage-inspired color palettes for R☆12Aug 21, 2020Updated 5 years ago
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆171Mar 10, 2026Updated 2 weeks ago
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- ☆38Apr 8, 2022Updated 3 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆20Dec 3, 2022Updated 3 years ago
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Aug 8, 2024Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig …☆14Aug 6, 2022Updated 3 years ago
- ☆15Apr 3, 2025Updated 11 months ago
- ☆23Mar 15, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A genome-wide IM blockwise likelihood estimation toolkit☆17Jun 24, 2024Updated last year
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- An R package for the spatial analysis of population genetic data.☆20Mar 19, 2026Updated last week
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated 10 months ago
- General tools for genomic analyses.☆388Feb 28, 2025Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A toolkit for identifying recombination and recombinant genotypes☆25Dec 3, 2025Updated 3 months ago
- ☆68Dec 5, 2022Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Aug 5, 2022Updated 3 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 4 months ago