Alternatives and similar repositories for gghybrid:

Users that are interested in gghybrid are comparing it to the libraries listed below

• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 2 years ago
• omys-omics / triangulaR
  Calculate Hybrid Index and Heterozygosity from SNP data
  ☆10Updated 4 months ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• esayyari / DiscoVista
  ☆39Updated last year
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆34Updated last year
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆16Updated 9 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated this week
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 2 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆50Updated 2 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• btmartin721 / ClineHelpR
  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…
  ☆16Updated 6 months ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆46Updated 5 months ago
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 2 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated this week
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆46Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆10Updated 2 years ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated 2 years ago
• BenjaminPeter / rangeexpansion
  ☆13Updated 7 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆30Updated 3 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• jingwanglab / Populus-Genomic-Consequences-of-Hybridization
  ☆16Updated 3 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 6 months ago
• sjoleary / SNPFILT
  ☆18Updated 7 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• russcd / Ancestry_HMM
  ☆28Updated 2 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 3 years ago