R package for analysis of hybrids and hybrid zones
☆21Dec 30, 2023Updated 2 years ago
Alternatives and similar repositories for gghybrid
Users that are interested in gghybrid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated 8 months ago
- Software package for estimating fine-scale recombination rate.☆18Jun 8, 2021Updated 4 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆48Mar 7, 2024Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆51Oct 29, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- plumage-inspired color palettes for R☆12Aug 21, 2020Updated 5 years ago
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆176Mar 30, 2026Updated last month
- Topology weighting by iterative sampling of sub-trees☆88Jan 5, 2025Updated last year
- ☆38Apr 13, 2026Updated last month
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆21Dec 3, 2022Updated 3 years ago
- Genetic Algorithm for Demographic Model Analysis☆56Feb 3, 2026Updated 3 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆176Apr 17, 2026Updated last month
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 3 years ago
- ☆15Apr 3, 2025Updated last year
- ☆24Mar 15, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A genome-wide IM blockwise likelihood estimation toolkit☆18Jun 24, 2024Updated last year
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 3 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆190Dec 19, 2024Updated last year
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- An R package for the spatial analysis of population genetic data.☆20May 15, 2026Updated last week
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- General tools for genomic analyses.☆391Mar 25, 2026Updated 2 months ago
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 5 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆51Nov 13, 2023Updated 2 years ago
- ☆68Dec 5, 2022Updated 3 years ago
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Aug 5, 2022Updated 3 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 6 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆67Mar 27, 2026Updated last month