spruceup
☆25Aug 15, 2025Updated 10 months ago
Alternatives and similar repositories for spruceup
Users that are interested in spruceup are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated 2 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆98Jan 28, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆14Mar 18, 2025Updated last year
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆38Apr 13, 2026Updated 2 months ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- Automated and parallel pipeline for the Curation of UltraconseRved Elements☆10Jan 16, 2025Updated last year
- ☆22Mar 25, 2014Updated 12 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆248Jun 5, 2026Updated last week
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sorting and subsampling phylogenomic datasets☆34Apr 9, 2025Updated last year
- ☆16Apr 11, 2026Updated 2 months ago
- Machuruku☆32Jan 20, 2025Updated last year
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆23Jun 2, 2021Updated 5 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 9 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆86Jun 4, 2026Updated last week
- Quartet Sampling method for phylogenetic branch support evaluation☆20Feb 26, 2024Updated 2 years ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 6 months ago
- ☆135Aug 29, 2024Updated last year
- que paquete☆10Jul 17, 2024Updated last year
- Phylogenetic ANalyses of DiversificAtion☆27Jan 27, 2026Updated 4 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆44Apr 25, 2024Updated 2 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆90May 6, 2026Updated last month
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆46Sep 5, 2023Updated 2 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 9 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jun 2, 2026Updated 2 weeks ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Updated this week
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17May 31, 2026Updated 2 weeks ago