spruceup
☆25Aug 15, 2025Updated last year
Alternatives and similar repositories for spruceup
Users that are interested in spruceup are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆18May 27, 2024Updated 2 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated 2 months ago
- A tool to root phylogenies☆24Sep 5, 2024Updated 2 years ago
- Automated and parallel pipeline for the Curation of UltraconseRved Elements☆10Jan 16, 2025Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆101Jan 28, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- Sorting and subsampling phylogenomic datasets☆35Apr 9, 2025Updated last year
- ☆14Aug 13, 2026Updated last month
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆38Apr 13, 2026Updated 5 months ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 4 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆260Jun 25, 2026Updated 3 months ago
- ☆22Mar 25, 2014Updated 12 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- ☆16Apr 11, 2026Updated 5 months ago
- Machuruku☆32Jan 20, 2025Updated last year
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated 2 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆17May 19, 2017Updated 9 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Aug 30, 2026Updated 3 weeks ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆92Updated this week
- Quartet Sampling method for phylogenetic branch support evaluation☆21Feb 26, 2024Updated 2 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆14Feb 24, 2025Updated last year
- ☆139Aug 29, 2024Updated 2 years ago
- que paquete☆10Jul 17, 2024Updated 2 years ago
- Phylogenetic ANalyses of DiversificAtion☆27Updated this week
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆24Jun 2, 2021Updated 5 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆45Apr 25, 2024Updated 2 years ago
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆49Sep 5, 2023Updated 3 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Sep 15, 2026Updated last week
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆95Sep 17, 2026Updated last week
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 5 years ago
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 6 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated 2 months ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jun 2, 2026Updated 3 months ago