metageni / Scaffold_builderLinks
Combining de novo and reference-guided assembly with Scaffold_builder
☆19Updated 3 years ago
Alternatives and similar repositories for Scaffold_builder
Users that are interested in Scaffold_builder are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 4 months ago
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆13Updated 4 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆17Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- ☆50Updated 2 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- ☆43Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- A program for divvying or partially filtering multiple sequence alignments☆26Updated 5 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated last year
- ☆16Updated 3 weeks ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 8 months ago
- ☆31Updated 3 years ago
- Convert genbank files to a swath of other formats☆18Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- The gview wiki migrated to GitHub.☆11Updated 4 years ago
- ☆14Updated 4 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 4 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 4 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Genomic sequence aligner☆26Updated last week
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago