metageni / Scaffold_builder
Combining de novo and reference-guided assembly with Scaffold_builder
☆19Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for Scaffold_builder
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆27Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- A program for divvying or partially filtering multiple sequence alignments☆22Updated 5 years ago
- Protein Alignment and Detection Interface☆61Updated 7 months ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆17Updated last year
- Gene-flank analysis tool☆26Updated 6 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 7 months ago
- ☆19Updated 2 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Detection of incorrectly labeled sequences across kingdoms☆80Updated 2 years ago
- ☆16Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 4 months ago
- ☆30Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 2 years ago
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆11Updated 4 years ago
- Automatic Assembly For The Fungi☆19Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- Find Unique genomic Regions☆29Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆29Updated last month
- ☆43Updated last year