metageni / Scaffold_builderLinks
Combining de novo and reference-guided assembly with Scaffold_builder
☆19Updated 3 years ago
Alternatives and similar repositories for Scaffold_builder
Users that are interested in Scaffold_builder are comparing it to the libraries listed below
Sorting:
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- ☆42Updated last year
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆13Updated 4 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Updated 10 months ago
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 11 months ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆14Updated this week
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 5 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 9 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆19Updated last year
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆46Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 3 weeks ago
- ☆24Updated 3 months ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Updated 3 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Updated 2 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago