metageni / Scaffold_builderLinks
Combining de novo and reference-guided assembly with Scaffold_builder
☆19Updated 3 years ago
Alternatives and similar repositories for Scaffold_builder
Users that are interested in Scaffold_builder are comparing it to the libraries listed below
Sorting:
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated 2 years ago
- ☆31Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Pipeline for major biological analyses.☆35Updated 3 years ago
- The gview wiki migrated to GitHub.☆11Updated 4 years ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- ☆19Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- ☆27Updated 5 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- ☆12Updated last year
- Eukaryotic genome annotation software.☆18Updated 2 weeks ago
- ☆45Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- HMmer Based UndeRstandinG of gene clustERs☆14Updated 2 weeks ago
- Taxa Insertion by Parsimony☆14Updated 4 months ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Gene-flank analysis tool☆27Updated 5 months ago
- ☆16Updated 4 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated 7 months ago
- UFCG: Universal Fungal Core Genes☆33Updated 4 months ago
- IslandPath standalone software☆32Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 7 months ago