blackrim / phyutilityLinks
☆22Updated 11 years ago
Alternatives and similar repositories for phyutility
Users that are interested in phyutility are comparing it to the libraries listed below
Sorting:
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆15Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆34Updated last month
- spruceup☆25Updated 2 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Automatic evaluation of HGTs☆30Updated 9 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 11 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆14Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 6 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 10 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆41Updated 5 months ago
- Multi-genome synteny block visualization tool☆47Updated last week
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework