blackrim / phyutilityLinks
☆22Updated 11 years ago
Alternatives and similar repositories for phyutility
Users that are interested in phyutility are comparing it to the libraries listed below
Sorting:
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Automatic evaluation of HGTs☆30Updated 6 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- ☆15Updated last year
- ContScout sequence contamination filter tool☆23Updated 3 months ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 10 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆33Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- ☆26Updated 4 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated 3 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- spruceup☆25Updated 2 weeks ago
- ☆32Updated 4 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 11 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 4 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- Genome-Genome circle synteny☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year