jtlovell / DEEPSPACE
Whole genome visualization and comparative genomics in R
☆13Updated 3 months ago
Alternatives and similar repositories for DEEPSPACE
Users that are interested in DEEPSPACE are comparing it to the libraries listed below
Sorting:
- Statistics and analysis for variation graphs☆39Updated 5 months ago
- ☆34Updated last year
- Identification of transposable element families from pangenome polymorphisms☆45Updated 2 months ago
- Software package for estimating fine-scale recombination rate.☆14Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆35Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- Multi-genome synteny block visualization tool☆37Updated 3 months ago
- ☆29Updated 4 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- ☆40Updated last year
- ☆15Updated 5 months ago
- A tool for evaluating long-read de novo assembly results☆35Updated 8 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated this week
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- ☆29Updated last week
- Genome Annotation Pipeline☆35Updated 8 months ago
- ☆19Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 5 months ago
- ☆32Updated this week
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A organelle de novo genome assembly toolkit☆59Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- Domain based annotation of transposable elements☆19Updated this week