jtlovell / DEEPSPACELinks
Whole genome visualization and comparative genomics in R
☆13Updated 3 months ago
Alternatives and similar repositories for DEEPSPACE
Users that are interested in DEEPSPACE are comparing it to the libraries listed below
Sorting:
- Statistics and analysis for variation graphs☆40Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Software package for estimating fine-scale recombination rate.☆14Updated 3 years ago
- A tool for evaluating long-read de novo assembly results☆35Updated 9 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Genome Annotation Pipeline☆35Updated 9 months ago
- ☆35Updated last year
- Identification of transposable element families from pangenome polymorphisms☆45Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- ☆16Updated 6 months ago
- ☆28Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 6 months ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- ☆35Updated 2 years ago
- Multi-genome synteny block visualization tool☆41Updated 4 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆35Updated last week
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 6 months ago
- ☆40Updated last year
- ☆29Updated 2 months ago
- ☆20Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated last week