Whole genome visualization and comparative genomics in R
☆24Feb 18, 2025Updated last year
Alternatives and similar repositories for DEEPSPACE
Users that are interested in DEEPSPACE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆24Feb 16, 2026Updated 5 months ago
- Sex Chromosome Identification by Negating Kmer Densities (SCINKD) is a wrapper to implicate the sex chromosome linkage group of a haploty…☆21Jun 21, 2026Updated last month
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- ☆32Jun 18, 2026Updated last month
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆33Jul 9, 2024Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆15Jan 29, 2024Updated 2 years ago
- ☆44Dec 29, 2025Updated 6 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- blastn2dotplots: multiple dot-plot visualizer☆28Sep 15, 2025Updated 10 months ago
- WinPCA. A package for windowed principal component analysis.☆54Jun 9, 2026Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆171Nov 24, 2025Updated 8 months ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Mar 26, 2026Updated 4 months ago
- TR annotation tool VAMPIRE☆19Jun 22, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆58Jul 19, 2025Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- ☆24May 31, 2024Updated 2 years ago
- ☆162Apr 13, 2026Updated 3 months ago
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 11 months ago
- ☆13Sep 11, 2025Updated 10 months ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 2 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆48May 8, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆62May 17, 2026Updated 2 months ago
- ☆17Jul 1, 2026Updated 3 weeks ago
- Fast Tandem Repeat Finder☆16Jun 17, 2026Updated last month
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆26Aug 20, 2020Updated 5 years ago
- ☆11Mar 4, 2025Updated last year
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- ☆251Jan 24, 2025Updated last year
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- OpenGL Powered Pretext Contact Map Viewer☆63Jul 17, 2026Updated last week
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- ANI based satellite annotation☆27Jun 9, 2026Updated last month
- CDS prediction in transcripts☆23Mar 5, 2025Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆36Sep 11, 2025Updated 10 months ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- ☆18Jan 29, 2025Updated last year