jtlovell / DEEPSPACELinks
Whole genome visualization and comparative genomics in R
☆18Updated 11 months ago
Alternatives and similar repositories for DEEPSPACE
Users that are interested in DEEPSPACE are comparing it to the libraries listed below
Sorting:
- Identification of transposable element families from pangenome polymorphisms☆55Updated 7 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- A organelle de novo genome assembly toolkit☆73Updated 10 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Statistics and analysis for variation graphs☆47Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated last month
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- ☆21Updated last year
- TGS scaffolding☆47Updated 4 years ago
- ☆22Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆127Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆99Updated last week
- ☆88Updated last month
- Multi-genome synteny block visualization tool☆52Updated last week
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Software package for estimating fine-scale recombination rate.☆17Updated 4 years ago
- ☆45Updated 3 years ago
- ☆32Updated this week
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆55Updated 6 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆43Updated 2 months ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆14Updated 2 months ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated last year
- Centromics: visualing centromeres with multiple omics data☆20Updated 2 years ago
- ☆33Updated 10 months ago
- HiCAT new project☆30Updated 8 months ago