☆24May 31, 2024Updated 2 years ago
Alternatives and similar repositories for SuperPangenomeofGrapevines
Users that are interested in SuperPangenomeofGrapevines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Comparative Genomics Framework Integrating Synteny Visualization☆17May 6, 2026Updated 2 months ago
- ☆28May 12, 2026Updated 2 months ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆30Apr 17, 2025Updated last year
- ☆11Sep 4, 2024Updated last year
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆73Oct 23, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 8 months ago
- scripts used in Rice Pangenome Projects (Evolution).☆16Oct 29, 2023Updated 2 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated 2 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- a Semi-automated pipeline for assembling T2T genome☆28Oct 16, 2025Updated 8 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆24Apr 25, 2024Updated 2 years ago
- ☆26Jun 27, 2026Updated 2 weeks ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆46Updated this week
- ☆29Oct 20, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 2 weeks ago
- Package to Draw NLR Domain Architecture using NLRtracker Output☆16Jul 30, 2021Updated 4 years ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆17Jun 6, 2026Updated last month
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 2 years ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated 2 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 6 months ago
- Whole genome visualization and comparative genomics in R☆24Feb 18, 2025Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆20Nov 29, 2022Updated 3 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- An efficient assembly tool for plant mitochondrial genome☆71May 31, 2024Updated 2 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- ☆31Apr 16, 2023Updated 3 years ago
- ☆17Mar 7, 2025Updated last year
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆75Sep 24, 2024Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆58Jul 19, 2025Updated 11 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆51Sep 22, 2025Updated 9 months ago
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated 2 months ago
- HiCAT new project☆36May 18, 2025Updated last year
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 8 months ago