NotebookOFXiaoMing / SuperPangenomeofGrapevinesView external linksLinks
☆21May 31, 2024Updated last year
Alternatives and similar repositories for SuperPangenomeofGrapevines
Users that are interested in SuperPangenomeofGrapevines are comparing it to the libraries listed below
Sorting:
- ☆17Dec 8, 2025Updated 2 months ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆25Apr 17, 2025Updated 9 months ago
- ☆10Sep 4, 2024Updated last year
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated last year
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆66Oct 23, 2025Updated 3 months ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Oct 29, 2025Updated 3 months ago
- ☆24Apr 22, 2025Updated 9 months ago
- a Semi-automated pipeline for assembling T2T genome☆25Oct 16, 2025Updated 3 months ago
- ☆27Oct 20, 2023Updated 2 years ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 2 years ago
- ☆29Apr 16, 2023Updated 2 years ago
- ☆28Mar 4, 2022Updated 3 years ago
- This is the standalone version of the EviAnn pipeline☆136Feb 5, 2026Updated last week
- An efficient assembly tool for plant mitochondrial genome☆69May 31, 2024Updated last year
- ☆15Mar 7, 2025Updated 11 months ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated last year
- scripts used in Rice Pangenome Projects (Evolution).☆13Oct 29, 2023Updated 2 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated last year
- Package to Draw NLR Domain Architecture using NLRtracker Output☆15Jul 30, 2021Updated 4 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆41Updated this week
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 3 months ago
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated last year
- ☆17Nov 26, 2023Updated 2 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 7 months ago
- Whole genome visualization and comparative genomics in R☆21Feb 18, 2025Updated 11 months ago
- ☆71Sep 24, 2024Updated last year
- ☆49Sep 4, 2025Updated 5 months ago
- Scripting analyses of genomes in Ensembl Plants☆42Jan 1, 2026Updated last month
- Single-cell data analysis☆15Sep 11, 2025Updated 5 months ago
- Graph-based Sequence Assembly Toolkit☆22Nov 22, 2024Updated last year
- ☆24Dec 15, 2025Updated last month
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 5 months ago