ddiazdom / grlBWTLinks
Efficient construction of the BWT using string compression
☆18Updated 2 months ago
Alternatives and similar repositories for grlBWT
Users that are interested in grlBWT are comparing it to the libraries listed below
Sorting:
- Efficient, parallel compression for terabyte-scale data☆48Updated 2 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 4 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago
- A hash map using the BooPHF perfect hash function☆13Updated 8 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Fast and cache-efficient full-text pangenome index☆29Updated this week
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 4 months ago
- ☆25Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- ☆17Updated 2 years ago
- Self-contained, multi-threaded fasta/q parser☆45Updated 10 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Pan-genome Seed Index☆20Updated 4 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- ☆25Updated 4 years ago
- Multiple sequence alignment of long tandem repeats☆19Updated last month
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 2 weeks ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- GBWT in Rust☆43Updated 4 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Library for the Handle Graph abstraction☆23Updated last month
- ☆28Updated 3 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 4 months ago