ddiazdom / grlBWTView external linksLinks
Efficient construction of the BWT using string compression
☆21Jun 3, 2025Updated 8 months ago
Alternatives and similar repositories for grlBWT
Users that are interested in grlBWT are comparing it to the libraries listed below
Sorting:
- Efficient, parallel compression for terabyte-scale data☆58Sep 27, 2025Updated 4 months ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 7 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14May 11, 2018Updated 7 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 7 years ago
- Wavelet tree based on a fixed block boosting technique☆16May 18, 2021Updated 4 years ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- ☆12Aug 23, 2023Updated 2 years ago
- GBWT in Rust☆45Dec 26, 2025Updated last month
- An optimal space run-length Burrows-Wheeler transform full-text index☆68May 31, 2023Updated 2 years ago
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 9 months ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆18Sep 9, 2025Updated 5 months ago
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- A python toolkit for building and querying multi-string BWTs☆27Mar 2, 2017Updated 8 years ago
- Simple succinct data structures (in Rust)☆54Dec 26, 2025Updated last month
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- A space-efficient compressor based on the Re-Pair grammar☆10Apr 6, 2017Updated 8 years ago
- String Visualizer☆12Dec 18, 2025Updated last month
- Generic hash table library in C☆39Jan 2, 2026Updated last month
- MAW: a suite on the computation and application of Minimal Absent Words☆16Nov 1, 2021Updated 4 years ago
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated 9 months ago
- ☆14Feb 7, 2020Updated 6 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- Succinct Data Structure Library 3.0☆102Dec 15, 2025Updated last month
- A C++ port of the IRLBA algorithm, based on the C code in the R package.☆17Jan 15, 2026Updated 3 weeks ago
- ☆18May 10, 2023Updated 2 years ago
- ☆17Dec 7, 2022Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Aug 29, 2025Updated 5 months ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 4 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Jun 23, 2025Updated 7 months ago
- Automatically exported from code.google.com/p/esaxx☆17Jun 23, 2015Updated 10 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago