ddiazdom / grlBWTLinks
Efficient construction of the BWT using string compression
☆20Updated 4 months ago
Alternatives and similar repositories for grlBWT
Users that are interested in grlBWT are comparing it to the libraries listed below
Sorting:
- Efficient, parallel compression for terabyte-scale data☆48Updated 2 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆26Updated 5 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 7 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- Fast and cache-efficient full-text pangenome index☆29Updated this week
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 6 months ago
- Self-contained, multi-threaded fasta/q parser☆48Updated last year
- ☆16Updated 2 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated last week
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Pan-genome Seed Index☆20Updated 7 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆24Updated 4 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- ☆17Updated 2 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- Multiple sequence alignment of long tandem repeats☆21Updated 2 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- GBWT in Rust☆42Updated 6 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆53Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Bidirectional WFA (Paper)☆47Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- 1-code framework: docs, C-library, and tools☆23Updated last week
- ☆24Updated last month