ddiazdom / grlBWT
Efficient construction of the BWT using string compression
☆17Updated 6 months ago
Alternatives and similar repositories for grlBWT:
Users that are interested in grlBWT are comparing it to the libraries listed below
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated last month
- Efficient, parallel compression for terabyte-scale data☆43Updated 3 months ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated last month
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 11 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ☆28Updated 3 weeks ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆17Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last week
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- ☆17Updated 4 years ago
- ☆25Updated 3 years ago
- General purpose utility related to GAF files☆24Updated 2 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- recompute GFA link overlaps☆25Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- ☆28Updated 7 months ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- ☆15Updated last year
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 3 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Pan-genome Seed Index☆20Updated last month
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Self-contained, multi-threaded fasta/q parser☆43Updated 7 months ago