DovetailGenomics / HiRise_July2015_GR

Related projects ⓘ

Alternatives and complementary repositories for HiRise_July2015_GR

• mapleforest / HaploMerger2
  ☆43Updated 7 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆53Updated 6 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆33Updated 2 years ago
• shilpagarg / DipAsm
  ☆77Updated 4 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆35Updated 6 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆42Updated 2 months ago
• baozg / phased-assembly-check
  ☆28Updated 2 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆43Updated 9 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆63Updated 3 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆53Updated 2 years ago
• daewoooo / SVbyEye
  ☆72Updated last month
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆30Updated last month
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆33Updated this week
• tvkent / GERPplusplus
  GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.
  ☆20Updated 8 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated last week
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 5 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 8 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆45Updated 3 weeks ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆32Updated 3 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆40Updated 10 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆64Updated last month
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆26Updated 6 months ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 8 years ago