DovetailGenomics / HiRise_July2015_GRLinks
test repository
☆29Updated 2 years ago
Alternatives and similar repositories for HiRise_July2015_GR
Users that are interested in HiRise_July2015_GR are comparing it to the libraries listed below
Sorting:
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆75Updated 2 weeks ago
- TGS scaffolding☆47Updated 4 years ago
- Show pangenome graphs in an easy way☆56Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- ☆31Updated 11 months ago
- ☆78Updated 5 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- ☆31Updated 6 years ago
- ☆44Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆58Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆45Updated 9 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆35Updated last year
- Draw a dot plot from a paf alignment☆35Updated 2 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated 3 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆54Updated 4 months ago
- finshingTool☆54Updated 9 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 weeks ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago