DovetailGenomics / HiRise_July2015_GR
test repository
☆29Updated last year
Alternatives and similar repositories for HiRise_July2015_GR:
Users that are interested in HiRise_July2015_GR are comparing it to the libraries listed below
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- ☆43Updated 8 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago
- ☆76Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- ☆29Updated 2 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 11 months ago
- A program for assessing the T2T genome continuity☆69Updated 2 weeks ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆20Updated 8 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 8 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- Error correction of ONT transcript reads☆59Updated last year
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- Simple pileup-based variant caller☆88Updated last month
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- ☆79Updated 2 weeks ago