jkimlab / msPIPE
☆17Updated last year
Alternatives and similar repositories for msPIPE:
Users that are interested in msPIPE are comparing it to the libraries listed below
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆18Updated 4 years ago
- ☆21Updated 7 months ago
- ☆13Updated last year
- ☆10Updated 3 months ago
- R package to explore active transposable elements with RNA-seq data☆19Updated 2 years ago
- ☆14Updated 6 years ago
- ☆17Updated 2 years ago
- ☆16Updated 4 years ago
- ☆23Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- ☆24Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆21Updated last month
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 6 months ago
- ☆17Updated 9 months ago
- ☆35Updated 5 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆18Updated 5 years ago
- ☆10Updated last year
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 3 months ago
- Invertory of TE-gene isoforms☆9Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆20Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- ☆11Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated last month
- ☆19Updated 3 months ago
- ☆15Updated 2 years ago