Alternatives and similar repositories for msPIPE

Users that are interested in msPIPE are comparing it to the libraries listed below

• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• dozmorovlab / multiHiCcompare
  Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.
  ☆10Updated 3 years ago
• sunyumail93 / PipeRiboseq
  A comprehensive pipeline for Ribo-seq data analysis
  ☆11Updated 6 months ago
• plantformatics / Socrates
  ☆23Updated 9 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 4 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆23Updated 2 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 7 months ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• nghiavtr / FuSeq_WES
  ☆14Updated 2 years ago
• mortazavilab / cerberus
  ☆20Updated last year
• CSOgroup / CALDER
  ☆22Updated 2 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆38Updated 8 months ago
• ZhaiLab-SUSTech / snuupy
  single-nucleus nanopore reads processing pipeline
  ☆16Updated 2 years ago
• MengjunWu / TCseq
  An R package for time course sequencing data analysis
  ☆20Updated 2 years ago
• Xinglab / rMATS-long
  ☆34Updated last month
• scoutzxb / CscoreTool
  ☆22Updated 5 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆22Updated last year
• zhailab / polyAcaller
  ☆10Updated 5 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆26Updated last year
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆26Updated 2 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆17Updated 5 months ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago