sanger-tol / yahsLinks
Yet another Hi-C scaffolding tool
☆22Updated last year
Alternatives and similar repositories for yahs
Users that are interested in yahs are comparing it to the libraries listed below
Sorting:
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- ☆28Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆43Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- ☆31Updated 5 years ago
- ☆31Updated 10 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆34Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- SV calling for diploid assemblies☆29Updated last year
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- TD2☆23Updated 5 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- ☆16Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated last week
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- ☆16Updated 5 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding