Alternatives and similar repositories for yahs:

Users that are interested in yahs are comparing it to the libraries listed below

• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆37Updated last year
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆20Updated 4 years ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆25Updated last month
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 4 years ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆30Updated 4 years ago
• lardo / khaper
  ☆27Updated 2 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆17Updated 3 months ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆20Updated 4 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 5 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆29Updated 3 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated this week
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆36Updated this week
• yanyew / SynGAP
  ☆31Updated 2 months ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆29Updated last month
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• i10labtitech / GINGER
  ☆27Updated last year
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆25Updated last month
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated 9 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆20Updated last year
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year