sanger-tol / yahsLinks
Yet another Hi-C scaffolding tool
☆22Updated last year
Alternatives and similar repositories for yahs
Users that are interested in yahs are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 3 months ago
- ☆28Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Multi-genome synteny block visualization tool☆50Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- ☆44Updated last year
- Domain based annotation of transposable elements☆21Updated 2 months ago
- An R package to infer and analyze synteny networks from protein sequences☆35Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆29Updated last month
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆29Updated this week
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated last month
- ☆29Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆33Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated last month
- A pipeline for genomic variant detection with genome assemblies at population scale☆33Updated 6 months ago
- SV genotyper for long reads with a variation graph☆14Updated 4 months ago
- ☆31Updated 11 months ago