ratschlab / RiboDiff
RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data
☆23Updated 8 years ago
Alternatives and similar repositories for RiboDiff:
Users that are interested in RiboDiff are comparing it to the libraries listed below
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Tools for analyzing DNA methylation data☆36Updated last month
- Genomic Association Tester☆30Updated last year
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆23Updated 6 years ago
- ☆78Updated 11 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis,…☆12Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- A software for calculating telomere length☆68Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43Updated 7 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated last month
- ☆33Updated last year
- RNA-seq workflow: differential transcript usage☆20Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- 4C-seq processing pipeline☆23Updated 10 months ago
- An awk-like VCF parser☆56Updated last year