Alternatives and similar repositories for legendkit

Users that are interested in legendkit are comparing it to the libraries listed below

• regulatory-genomics / precellar
  ☆40Updated last week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated 2 weeks ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆53Updated 3 months ago
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆18Updated 2 years ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated last year
• paulsengroup / hictkpy
  Python bindings for hictk: read and write .cool and .hic files directly from Python
  ☆15Updated this week
• b2jia / jie
  A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
  ☆18Updated 2 years ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated last week
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆35Updated 5 months ago
• ysora / stripenn
  Architectural stripe detection from 3D genome conformation data
  ☆18Updated 3 weeks ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆58Updated 5 months ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆39Updated this week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆52Updated 9 months ago
• PouletAxel / SIP
  SIP: Significant Interaction Peak caller
  ☆15Updated 5 months ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆38Updated last year
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated 2 years ago
• goodarzilab / pypage
  python implementation of the PAGE algorithm
  ☆17Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 5 months ago
• tjs23 / nuc_dynamics
  Particle dynamics and simulated annealing for chromosome structure calculation
  ☆29Updated last year
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆30Updated 2 years ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆27Updated 4 years ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆27Updated 2 weeks ago
• kaizhang / anndata-rs
  ☆36Updated last week
• GangCaoLab / DLO-HiC-Tools
  Tools for DLO HiC data analyze
  ☆16Updated 2 years ago
• XiaoTaoWang / Best-Labs-of-3D-Genome
  Data and the co-authored network I extracted for lab selection in 3D genome research field
  ☆15Updated 3 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 5 months ago
• lareaulab / psix
  ☆16Updated last year
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆38Updated 6 months ago