CahanLab / epoch
gene regulatory network reconstruction from scRNA-Seq
☆24Updated 3 years ago
Alternatives and similar repositories for epoch
Users that are interested in epoch are comparing it to the libraries listed below
Sorting:
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated this week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- ☆47Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆78Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated 2 years ago
- ☆41Updated this week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 2 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 2 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 6 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆37Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 3 years ago