RitataLU / MethylC-analyzer
☆11Updated last year
Related projects ⓘ
Alternatives and complementary repositories for MethylC-analyzer
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆22Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last year
- ☆14Updated 6 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Updated and optimized fork of BSMAP☆21Updated 3 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆25Updated 5 years ago
- ☆35Updated 5 years ago
- Algorithm to detect germline and de novo transposon insertions☆26Updated 7 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- New version of JACUSA -> 2.0☆23Updated this week
- ENCODE long read RNA-seq pipeline☆44Updated last year
- ☆24Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 6 months ago
- 4C-seq processing pipeline☆22Updated 7 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆16Updated 4 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated 11 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆23Updated 6 months ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated last month
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Full-Length RNA Analysis pipeline developted by BGI RD group.☆17Updated 2 years ago
- Converts snpeff annotations into MAF☆10Updated 3 months ago