miRTop / mirGFF3Links
GFF3 format with miRNA and isomiR information from sequencing data
☆15Updated 6 years ago
Alternatives and similar repositories for mirGFF3
Users that are interested in mirGFF3 are comparing it to the libraries listed below
Sorting:
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 8 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- R package for DNA methylation analysis☆19Updated last year
- ☆51Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆23Updated 9 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- ☆37Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 7 months ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 4 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- QDNAseq package for Bioconductor☆51Updated last year
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- ☆38Updated 4 years ago