GFF3 format with miRNA and isomiR information from sequencing data
☆17Aug 5, 2019Updated 6 years ago
Alternatives and similar repositories for mirGFF3
Users that are interested in mirGFF3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆19Apr 24, 2025Updated last year
- miRTrace☆12Jun 14, 2023Updated 2 years ago
- Comprehensive analysis of small RNA sequencing data☆35May 14, 2025Updated 11 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆32Dec 28, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆12Apr 2, 2014Updated 12 years ago
- Pipeline for lncRNA, Circular RNA, and novel mRNA identification.☆11May 5, 2023Updated 3 years ago
- This repo contains tutorials for different NGS analysis methods☆13Nov 29, 2021Updated 4 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- pipeline for the analysis of small RNA data☆14Jun 24, 2019Updated 6 years ago
- ☆20Sep 5, 2023Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- ☆61Jul 17, 2025Updated 9 months ago
- We help each other to study single-cell data☆16Jan 23, 2025Updated last year
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jan 29, 2020Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆30Updated this week
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 5 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- Helper tools for popscle☆21Apr 21, 2023Updated 3 years ago
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 2 years ago
- Material for the 2017 May Institute☆13Jun 25, 2017Updated 8 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- R package with well defined templates for most common pipelines☆18Jul 11, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets☆21Mar 28, 2021Updated 5 years ago
- Automatic Assembly For The Fungi☆26Mar 11, 2026Updated last month
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆20Jan 13, 2021Updated 5 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- ☆23May 16, 2020Updated 5 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated 9 months ago