miRTop / mirGFF3
GFF3 format with miRNA and isomiR information from sequencing data
☆14Updated 5 years ago
Related projects: ⓘ
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆17Updated this week
- Python package and routines for merging VCF files☆29Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last year
- QDNAseq bin annotation for hg38☆13Updated 2 years ago
- ☆23Updated 5 years ago
- This repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.☆9Updated 7 years ago
- R package for DNA methylation analysis☆17Updated last month
- Genomic Association Tester☆28Updated last year
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆26Updated this week
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 4 years ago
- ☆22Updated 2 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 2 months ago
- a bucket of bioinformatics scripts☆13Updated 11 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 weeks ago
- Adapters for trimming☆30Updated 5 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆31Updated 10 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Simple web browser to visualize HiC tracks☆18Updated 4 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 3 years ago