MarWoes / wg-blimp
wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
☆27Updated 2 years ago
Alternatives and similar repositories for wg-blimp:
Users that are interested in wg-blimp are comparing it to the libraries listed below
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated last month
- ☆33Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆22Updated 4 months ago
- Reconstruction of focal amplifications with long reads☆20Updated 2 weeks ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆45Updated 3 weeks ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- processing 10x genomics reads☆25Updated 5 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 11 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- ☆23Updated 3 years ago
- Structural variant merging tool☆49Updated 7 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- ☆21Updated 10 months ago