wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
☆29Jul 31, 2022Updated 3 years ago
Alternatives and similar repositories for wg-blimp
Users that are interested in wg-blimp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆33Feb 15, 2022Updated 4 years ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Nov 9, 2025Updated 4 months ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Nov 19, 2020Updated 5 years ago
- Modular framework for deep learning predictions on methylation data.☆57Jun 2, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆15Jan 10, 2023Updated 3 years ago
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 5 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆41Aug 17, 2021Updated 4 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆22Apr 24, 2017Updated 8 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Mar 24, 2026Updated last week
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆26Mar 31, 2023Updated 3 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Feb 28, 2022Updated 4 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated 10 months ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17May 26, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14May 12, 2023Updated 2 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- ☆10Apr 6, 2022Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Jan 28, 2022Updated 4 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆22Mar 30, 2024Updated 2 years ago
- ☆54Mar 9, 2022Updated 4 years ago
- A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data☆17Apr 27, 2021Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 14, 2025Updated 5 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago