MarWoes / wg-blimp
wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
☆27Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for wg-blimp
- ☆21Updated 2 weeks ago
- ☆33Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆37Updated last month
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆29Updated last year
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆18Updated 7 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Micro DNA identification☆22Updated 3 years ago
- ☆23Updated 3 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 6 months ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆29Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Long read to rMATS☆31Updated last year
- Somatic point mutation caller☆25Updated last week
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Reconstruction of focal amplifications with long reads☆13Updated this week
- Fork of the Polysolver project☆30Updated 5 years ago
- Assign gene names to regions in a BED file☆23Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- ☆29Updated 3 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆24Updated 2 months ago
- ☆37Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago