MarWoes / wg-blimpLinks
wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
☆28Updated 3 years ago
Alternatives and similar repositories for wg-blimp
Users that are interested in wg-blimp are comparing it to the libraries listed below
Sorting:
- ☆24Updated 11 months ago
- ☆38Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- ☆20Updated 3 years ago
- ☆26Updated last year
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- ☆23Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- alternative splicing analysis pipeline☆20Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- ☆34Updated 3 weeks ago
- Micro DNA identification☆24Updated 4 years ago
- CADD-SV – a framework to score the effect of structural variants☆17Updated last week
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆24Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- ☆13Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆37Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- A software for calculating telomere length☆72Updated 7 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 9 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ☆51Updated 6 years ago