genepi / mtdna-server-2Links
mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes
☆19Updated 9 months ago
Alternatives and similar repositories for mtdna-server-2
Users that are interested in mtdna-server-2 are comparing it to the libraries listed below
Sorting:
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated last month
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆35Updated 5 months ago
- ☆44Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Variant Interpretation Pipeline☆43Updated last week
- TIDDIT - structural variant calling☆76Updated 5 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 7 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 11 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Structural variant merging tool☆55Updated last year
- ☆24Updated 3 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 6 months ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆36Updated 2 months ago
- ☆33Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…☆18Updated 2 years ago
- ☆22Updated 2 years ago
- ☆35Updated 4 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- ☆21Updated 7 months ago