mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes
☆22Nov 13, 2025Updated 5 months ago
Alternatives and similar repositories for mtdna-server-2
Users that are interested in mtdna-server-2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Mar 16, 2026Updated 3 weeks ago
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 7 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Mar 26, 2026Updated 2 weeks ago
- Repository☆10Oct 23, 2024Updated last year
- mtDNA Variant Caller☆35Dec 23, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CPIC Data definitions and code to use that data☆31Mar 13, 2026Updated last month
- Gene copy number prediction from k-mer frequencies☆16Jul 29, 2024Updated last year
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated last month
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- A structural variant filtering and prioritization tool for long-read sequencing data☆38Updated this week
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- Short Tandem Repeat disease loci resource☆27Apr 2, 2026Updated last week
- ☆13Jun 21, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated 2 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ☆15Mar 26, 2026Updated 2 weeks ago
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated last month
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 5 months ago
- LOVD3 development repository☆25Oct 13, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 3 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 7 months ago
- Complex structural variant visualization for HiFi sequencing data☆47Oct 24, 2025Updated 5 months ago
- Python package with CLI for the analysis of single cell methylation data.☆20Oct 29, 2024Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- ☆20Sep 5, 2023Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 7 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 4 months ago
- R tool to analyse and integrate multiple -omics data☆15Jan 4, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Jun 12, 2023Updated 2 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆103Apr 8, 2026Updated last week
- Medical Genetics Sequence Analysis Pipelines☆88Updated this week
- ☆11Mar 23, 2026Updated 3 weeks ago
- ☆15May 19, 2025Updated 10 months ago
- A source code to replicate Sakaue S. et al. Nat Commun. 2020.☆15Oct 29, 2020Updated 5 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated last year