microRNA PREdiction From small RNA-seq data
☆32Dec 28, 2017Updated 8 years ago
Alternatives and similar repositories for miR-PREFeR
Users that are interested in miR-PREFeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plant small RNA target prediction tool☆27Dec 19, 2016Updated 9 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- IRESfinder is a python package for the identification of RNA internal ribosome entry site in eukaryotic cell☆20Aug 27, 2021Updated 5 years ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆15Jun 9, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- Pipeline for lncRNA, Circular RNA, and novel mRNA identification.☆11May 5, 2023Updated 3 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆161Dec 11, 2025Updated 10 months ago
- GFF3 format with miRNA and isomiR information from sequencing data☆17Aug 5, 2019Updated 7 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆15Jul 24, 2025Updated last year
- microRNA profiling pipeline☆83Jan 18, 2022Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Aug 20, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 5 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43May 11, 2017Updated 9 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆22Oct 4, 2025Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 8 months ago
- Estimate microRNA activity in single cells☆13May 4, 2022Updated 4 years ago
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆47Oct 29, 2018Updated 7 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- QTG_Finder, a QTL causal gene prioritization tool☆11Nov 9, 2024Updated last year
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 8 years ago
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 7 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 8 years ago
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forests☆12Jun 12, 2018Updated 8 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 5 months ago
- GATB Minia assembly pipeline☆32Feb 2, 2023Updated 3 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- generating workflows with XML and XSLT☆11Mar 15, 2015Updated 11 years ago
- ☆10Sep 11, 2020Updated 6 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- circular RNA analysis toolset☆91Sep 8, 2024Updated 2 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 7 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 4 years ago