hangelwen / miR-PREFeRLinks
microRNA PREdiction From small RNA-seq data
☆29Updated 7 years ago
Alternatives and similar repositories for miR-PREFeR
Users that are interested in miR-PREFeR are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 7 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 4 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆28Updated 2 years ago
- new repo☆28Updated 4 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Plant small RNA target prediction tool☆26Updated 8 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 7 months ago
- Long read to rMATS☆31Updated 2 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- iTAK☆38Updated last year
- ☆21Updated 2 years ago
- Evolutionary Transcriptomics with R☆43Updated 2 weeks ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Scripts for NGS processing☆17Updated 7 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- ☆29Updated 4 years ago
- ☆34Updated last year