YuSugihara / QTL-seq
QTL-seq pipeline to identify causative mutations responsible for a phenotype
☆51Updated 3 months ago
Alternatives and similar repositories for QTL-seq:
Users that are interested in QTL-seq are comparing it to the libraries listed below
- MutMap pipeline to identify causative mutations responsible for a phenotype☆52Updated 3 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated this week
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆69Updated 5 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆85Updated 2 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆48Updated 4 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated last month
- Useful bioinformatic scripts☆53Updated 2 months ago
- Genomic related tools☆71Updated 3 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆50Updated 7 months ago
- ☆73Updated 6 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated last month
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆13Updated 2 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- DNA序列比对结果 可视化展示工具☆44Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- Genome Scripts used in fungal comparative genomics☆65Updated 4 years ago
- Some bioinformic domestic scripts.☆34Updated 2 years ago
- NLR-Annotator upload☆62Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆86Updated last year
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆84Updated 3 weeks ago
- A novel genome assembly pipeline based on deep learning☆59Updated last month
- A pipeline for isoseq☆23Updated 6 years ago
- ☆19Updated 5 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆35Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- ☆42Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆93Updated 2 years ago