zyndagj / BSMAPzLinks
Updated and optimized fork of BSMAP
☆23Updated 4 years ago
Alternatives and similar repositories for BSMAPz
Users that are interested in BSMAPz are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆28Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- ☆31Updated last month
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- ☆83Updated 8 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆37Updated 6 years ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Allele-specific alignment sorting☆60Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆51Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Reconstruction of focal amplifications with long reads☆22Updated 2 weeks ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago