ENCODE-DCC / wgbs-pipelineLinks
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
☆32Updated 3 years ago
Alternatives and similar repositories for wgbs-pipeline
Users that are interested in wgbs-pipeline are comparing it to the libraries listed below
Sorting:
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- Version II of Mandalorion☆32Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 2 months ago
- Tools for analyzing DNA methylation data☆41Updated 3 weeks ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆22Updated 5 months ago
- Package for analysis and characterization of differential TADs☆23Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 7 months ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆69Updated 6 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆41Updated last month
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- PSI-Sigma☆38Updated last year
- Somatic point mutation caller☆28Updated last month
- STARRPeaker: STARR-seq peak caller☆16Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆37Updated 5 years ago