ENCODE-DCC / wgbs-pipeline
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
☆29Updated 2 years ago
Alternatives and similar repositories for wgbs-pipeline:
Users that are interested in wgbs-pipeline are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last week
- ☆40Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆33Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆40Updated 3 months ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- Tools for analyzing DNA methylation data☆36Updated last month
- Tutorial Website☆55Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- 4C-seq processing pipeline☆22Updated 9 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 9 months ago
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆40Updated 7 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- IDR☆31Updated last year
- RNA editing tests☆16Updated 4 years ago
- CN-Learn☆29Updated 4 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Find and characterise transposable element insertions☆21Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- ☆13Updated 7 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago