ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
☆35Feb 15, 2022Updated 4 years ago
Alternatives and similar repositories for wgbs-pipeline
Users that are interested in wgbs-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 4 years ago
- HiC uniform processing pipeline☆67Nov 8, 2023Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Jan 28, 2022Updated 4 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 3 years ago
- ☆169Apr 13, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆199Apr 19, 2026Updated 6 months ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 7 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 3 years ago
- ENCODE ATAC-seq pipeline☆459Jul 18, 2024Updated 2 years ago
- ☆18Nov 15, 2021Updated 4 years ago
- DCC/DAC methylation pipeline source☆55Jul 29, 2020Updated 6 years ago
- R package for DNA methylation analysis☆21Oct 2, 2026Updated last month
- Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.☆17Sep 13, 2021Updated 5 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆21Nov 19, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Aug 25, 2026Updated 2 months ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 8 months ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing☆13May 8, 2021Updated 5 years ago
- ENCODE ChIP-seq pipeline☆283Feb 15, 2024Updated 2 years ago
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 5 years ago
- An R package for easy pie charts☆18Aug 25, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 4 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- A Perl/R pipeline for plotting metagenes☆41Mar 21, 2026Updated 7 months ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 6 months ago
- ☆14Apr 24, 2023Updated 3 years ago
- StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning☆13Updated this week
- A small-RNA sequencing analysis pipeline☆103Oct 29, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Bioconductor R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging p…☆11Jul 13, 2025Updated last year
- ALFA: Annotation Landscape for Aligned Reads☆14Jun 30, 2020Updated 6 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆67May 9, 2025Updated last year
- just get your chrom sizes☆17Mar 17, 2026Updated 7 months ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- TADsplimer☆10Jun 24, 2021Updated 5 years ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago