ENCODE-DCC / wgbs-pipelineLinks
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
☆32Updated 3 years ago
Alternatives and similar repositories for wgbs-pipeline
Users that are interested in wgbs-pipeline are comparing it to the libraries listed below
Sorting:
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Tools for analyzing DNA methylation data☆44Updated this week
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆42Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆49Updated 2 years ago
- ☆26Updated last year
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- ☆39Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- PSI-Sigma☆38Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Somatic point mutation caller☆32Updated 7 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆21Updated 3 weeks ago