ENCODE-DCC / wgbs-pipelineLinks
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
☆32Updated 3 years ago
Alternatives and similar repositories for wgbs-pipeline
Users that are interested in wgbs-pipeline are comparing it to the libraries listed below
Sorting:
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆38Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 2 weeks ago
- ☆46Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Somatic point mutation caller☆31Updated 5 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- ☆38Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- ☆63Updated 2 weeks ago
- ☆25Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- Tools for analyzing DNA methylation data☆43Updated last week
- ☆21Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆41Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- QDNAseq package for Bioconductor☆52Updated last year
- Version II of Mandalorion☆32Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- ☆13Updated 8 years ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆19Updated 3 months ago