a web-based R shiny application that wraps DESeq2 R package
☆13Apr 19, 2020Updated 6 years ago
Alternatives and similar repositories for deseq2shiny
Users that are interested in deseq2shiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆33Sep 14, 2020Updated 5 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- ☆20Sep 5, 2023Updated 2 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Apr 14, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆14Jan 14, 2018Updated 8 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆87Nov 11, 2020Updated 5 years ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 8 years ago
- ☆11Oct 8, 2018Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Mar 24, 2021Updated 5 years ago
- ASAP : Automated Single-cell Analysis Pipeline☆27Mar 10, 2026Updated 2 months ago
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18May 21, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This repository contains the source code for the tappAS application. See README for details.☆21Mar 9, 2026Updated 2 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Jan 26, 2026Updated 4 months ago
- ☆15Mar 1, 2026Updated 2 months ago
- ☆22Jul 15, 2025Updated 10 months ago
- Integrated Differential Expression and Pathway analysis☆137Feb 27, 2026Updated 3 months ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14May 16, 2026Updated last week
- Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researcher…☆37Apr 5, 2023Updated 3 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- ☆15Oct 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- Guide for the Differential Expression Analysis of RNAseq data using DESeq2☆25Nov 14, 2018Updated 7 years ago
- ☆15Dec 11, 2022Updated 3 years ago
- ☆14Oct 14, 2022Updated 3 years ago
- This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on …☆15Sep 24, 2019Updated 6 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 7 years ago
- Circular RNA Identification for Nanopore Sequencing☆22May 23, 2024Updated 2 years ago
- Encrypted filesystem gocryptfs GUI wrapper.☆18Nov 6, 2024Updated last year
- ☆24Apr 14, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 4 months ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆15Mar 15, 2023Updated 3 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 6 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com☆10Aug 2, 2021Updated 4 years ago