nasqar / deseq2shinyLinks
a web-based R shiny application that wraps DESeq2 R package
☆14Updated 5 years ago
Alternatives and similar repositories for deseq2shiny
Users that are interested in deseq2shiny are comparing it to the libraries listed below
Sorting:
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- ☆17Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆38Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated 2 years ago
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Updated 6 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- ☆38Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- ☆44Updated 6 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- Peak caller for CUT&TAG data☆28Updated 2 years ago