a web-based R shiny application that wraps DESeq2 R package
☆13Apr 19, 2020Updated 6 years ago
Alternatives and similar repositories for deseq2shiny
Users that are interested in deseq2shiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆33Sep 14, 2020Updated 6 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆15Jan 27, 2020Updated 6 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on …☆14Sep 24, 2019Updated 7 years ago
- ☆20Sep 5, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 6 months ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆14Jan 14, 2018Updated 8 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆87Nov 11, 2020Updated 5 years ago
- ☆11Oct 8, 2018Updated 8 years ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 8 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Sep 28, 2026Updated 2 weeks ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Mar 24, 2021Updated 5 years ago
- ASAP : Automated Single-cell Analysis Pipeline☆28Mar 10, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)☆13Aug 26, 2026Updated last month
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Oct 9, 2026Updated last week
- This repository contains the source code for the tappAS application. See README for details.☆22Jun 23, 2026Updated 3 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Sep 26, 2026Updated 3 weeks ago
- Integrated Differential Expression and Pathway analysis☆138Updated this week
- Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researcher…☆37Apr 5, 2023Updated 3 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Oct 9, 2026Updated last week
- Guide for the Differential Expression Analysis of RNAseq data using DESeq2☆25Nov 14, 2018Updated 7 years ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆24Apr 14, 2022Updated 4 years ago
- ☆15Dec 11, 2022Updated 3 years ago
- Circular RNA Identification for Nanopore Sequencing☆23May 23, 2024Updated 2 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 8 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 6 years ago
- Visualize coverage, canonical, and backsplice junctions.☆12Aug 17, 2021Updated 5 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Single Cell RNA PolyA Site Discovery☆11Jul 27, 2026Updated 2 months ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆20Feb 22, 2022Updated 4 years ago
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 9 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Updated this week
- ☆14Oct 14, 2022Updated 4 years ago
- barcode demultiplexing☆22Jun 4, 2019Updated 7 years ago
- ☆23Sep 6, 2016Updated 10 years ago
- ☆17Mar 1, 2026Updated 7 months ago