harvardinformatics / NGmergeLinks
Merging paired-end reads and removing adapters
☆30Updated 5 years ago
Alternatives and similar repositories for NGmerge
Users that are interested in NGmerge are comparing it to the libraries listed below
Sorting:
- for visual evaluation of read support for structural variation☆54Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆44Updated 11 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Merging paired-end reads and removing adapters☆46Updated 5 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- BigWig and BAM utilities☆97Updated last year
- processing 10x genomics reads☆26Updated 5 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 10 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago