jianhong / ATACseqQCLinks
ATAC-seq Quality Control
☆25Updated 3 months ago
Alternatives and similar repositories for ATACseqQC
Users that are interested in ATACseqQC are comparing it to the libraries listed below
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- Tutorial Website☆63Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated last month
- ATAC-seq lab for BIOINF545☆24Updated 11 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆110Updated last year
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆64Updated 5 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 6 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆33Updated 6 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 7 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- R package of colors for the Buenrostro Lab☆86Updated last year
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- ☆56Updated 5 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago