Tutorial for using the perturbseq library to load and manipulate experiments
☆24Aug 7, 2019Updated 6 years ago
Alternatives and similar repositories for perturbseq_demo
Users that are interested in perturbseq_demo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 3 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆71Jun 6, 2020Updated 6 years ago
- ☆18Jun 2, 2022Updated 4 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 8 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Feb 21, 2023Updated 3 years ago
- The R Bioconductor package for scMAGeCK.☆13Jul 10, 2026Updated last week
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆14Oct 16, 2025Updated 9 months ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆19Dec 11, 2025Updated 7 months ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆34Feb 22, 2018Updated 8 years ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 4 years ago
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆25Feb 2, 2025Updated last year
- ☆99Aug 12, 2024Updated last year
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- ATAC-seq Quality Control☆27Jul 13, 2026Updated last week
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆104Mar 28, 2024Updated 2 years ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆11Nov 10, 2023Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scID☆14Oct 21, 2021Updated 4 years ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆15Sep 23, 2025Updated 9 months ago
- ☆12Nov 20, 2023Updated 2 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- Codes to run deltaSVM models to predict allelic TF binding☆11Apr 5, 2021Updated 5 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆17Feb 6, 2026Updated 5 months ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 9 years ago
- create usable MS-Word web-pages☆14Aug 11, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Analysis on stop reasons☆10Jun 17, 2024Updated 2 years ago
- ☆25May 16, 2020Updated 6 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 6 months ago
- ☆17Jun 5, 2019Updated 7 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆11Nov 12, 2023Updated 2 years ago
- ☆12Aug 30, 2024Updated last year