Alternatives and similar repositories for perturbseq_demo

Users that are interested in perturbseq_demo are comparing it to the libraries listed below

• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆39Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 6 months ago
• HYsxe / PRINT
  ☆37Updated last year
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆126Updated last month
• YosefLab / popV
  ☆87Updated this week
• buenrostrolab / scPrinter
  ☆57Updated last month
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆78Updated 3 weeks ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆93Updated 4 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆126Updated 8 months ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆107Updated 2 years ago
• lilab-bcb / harmony-pytorch
  ☆61Updated 7 months ago
• bowang-lab / DeepVelo
  ☆47Updated last year
• SchubertLab / mvTCR
  ☆56Updated last year
• KevinMenden / scaden
  Deep Learning based cell composition analysis with Scaden.
  ☆87Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆69Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated 2 years ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆69Updated 2 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆32Updated 2 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆44Updated last month
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆42Updated 5 months ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆56Updated 5 years ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 3 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆35Updated 4 years ago
• zhanglhbioinfor / DIRECT-NET
  ☆13Updated 2 years ago
• yal054 / epiformer
  ☆26Updated 9 months ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆56Updated last week