thomasmaxwellnorman / perturbseq_demo
Tutorial for using the perturbseq library to load and manipulate experiments
☆19Updated 5 years ago
Alternatives and similar repositories for perturbseq_demo:
Users that are interested in perturbseq_demo are comparing it to the libraries listed below
- Tools for sgRNA calling in direct capture Perturb-seq data☆33Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Single cell omics biology annotations☆51Updated 3 weeks ago
- ☆35Updated 8 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- R implementation of GeneTrajectory☆58Updated last year
- ☆43Updated last year
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated 3 weeks ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- Molecular interactions inference from single-cell multi-omics data☆24Updated 3 weeks ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated last month
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 10 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- ☆47Updated last year
- ☆51Updated 6 months ago
- Predict RNA velocity through deep learning☆69Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆52Updated 4 years ago
- ☆51Updated 7 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 5 months ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- ☆13Updated 3 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆46Updated 3 weeks ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last week
- pseudobulking on an AnnData object☆30Updated last month
- ☆73Updated this week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago