thomasmaxwellnorman / perturbseq_demo
Tutorial for using the perturbseq library to load and manipulate experiments
☆18Updated 5 years ago
Alternatives and similar repositories for perturbseq_demo:
Users that are interested in perturbseq_demo are comparing it to the libraries listed below
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- Single cell omics biology annotations☆50Updated 2 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 4 months ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- R implementation of GeneTrajectory☆56Updated 11 months ago
- ☆36Updated 6 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆20Updated last month
- ☆51Updated 4 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆63Updated last month
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆31Updated 9 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year
- ☆44Updated 10 months ago
- Geometry-preserving random sampling☆80Updated 4 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- pseudobulking on an AnnData object☆29Updated last week
- ☆71Updated this week
- Predict RNA velocity through deep learning☆66Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆66Updated 2 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆66Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆103Updated 6 months ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆51Updated 4 years ago
- Benchmark of GRNs using the GRETA pipeline☆23Updated this week
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago