Alternatives and similar repositories for perturbseq_demo

Users that are interested in perturbseq_demo are comparing it to the libraries listed below

• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆39Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 4 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆77Updated 2 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 7 months ago
• HYsxe / PRINT
  ☆37Updated last year
• Durenlab / LINGER
  ☆119Updated 6 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆122Updated this week
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆49Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆107Updated 2 years ago
• YosefLab / popV
  ☆84Updated this week
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 2 months ago
• yal054 / epiformer
  ☆26Updated 7 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 10 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆76Updated 9 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆123Updated 6 months ago
• velocyto-team / velocyto-notebooks
  ☆57Updated 7 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆92Updated 3 months ago
• buenrostrolab / scPrinter
  ☆54Updated last month
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆43Updated last year
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆51Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆67Updated 3 weeks ago
• SchubertLab / mvTCR
  ☆56Updated last year
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆80Updated 10 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆30Updated last month
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆115Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆97Updated 11 months ago