QuKunLab / ATAC-pipe

Related projects ⓘ

Alternatives and complementary repositories for ATAC-pipe

• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆92Updated 4 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
  ☆72Updated last month
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆43Updated 4 years ago
• cxzhu / Paired-Tag
  Analysis of Paired-Tag datasets
  ☆39Updated 10 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated last year
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆65Updated 4 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆70Updated 9 months ago
• JiekaiLab / scTE
  ☆102Updated 7 months ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆43Updated 3 months ago
• xryanglab / RiboCode
  release version
  ☆48Updated 2 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆76Updated 2 years ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆38Updated last year
• tanlongzhi / dip-c
  Tools to analyze Dip-C (or other 3C/Hi-C) data
  ☆62Updated last week
• TheHumphreysLab / plot1cell
  ☆95Updated last year
• rpolicastro / scProportionTest
  ☆60Updated last year
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆50Updated last year
• marcus-seldin / QENIE
  Correlation-based approach for identification of endocrine interactions
  ☆11Updated 2 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆99Updated 2 years ago
• andygxzeng / BoneMarrowMap
  A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …
  ☆24Updated 3 weeks ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆46Updated 4 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆53Updated 3 years ago
• harvardinformatics / ATAC-seq
  ☆120Updated 5 years ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆72Updated 6 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆72Updated 3 months ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆32Updated 2 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆72Updated 4 years ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆11Updated last year
• TrinityCTAT / Trinity_CTAT
  ☆116Updated last year
• liulab-dfci / RIMA_pipeline
  ☆74Updated 10 months ago