Analysis pipeline for ATAC-seq Data
☆62Sep 2, 2021Updated 4 years ago
Alternatives and similar repositories for ATAC-pipe
Users that are interested in ATAC-pipe are comparing it to the libraries listed below
Sorting:
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Jun 21, 2022Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- ENCODE ATAC-seq pipeline☆446Jul 18, 2024Updated last year
- ☆11Feb 18, 2019Updated 7 years ago
- Tutorial Website☆64Feb 1, 2021Updated 5 years ago
- ☆145Jan 7, 2019Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆74Jan 8, 2025Updated last year
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- ☆18Jun 3, 2020Updated 5 years ago
- ☆445Jun 15, 2020Updated 5 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 6 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Oct 5, 2023Updated 2 years ago
- ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories☆12Apr 3, 2019Updated 6 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 6 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 2 years ago
- ☆19Mar 6, 2019Updated 6 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- A graph visualisation tool targeted at persistent homology applications.☆11Jul 28, 2020Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Jun 7, 2019Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆489Feb 20, 2026Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆268May 5, 2023Updated 2 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 9 months ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- ☆19Sep 20, 2021Updated 4 years ago
- a small collection for my R scripts☆166Mar 1, 2019Updated 6 years ago
- ATAC-seq snakemake pipeline☆88Feb 13, 2020Updated 6 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 4 years ago