Zhang-lab / ATAC-seq_QC_analysis
Atac-seq QC matrix
☆18Updated 10 months ago
Alternatives and similar repositories for ATAC-seq_QC_analysis:
Users that are interested in ATAC-seq_QC_analysis are comparing it to the libraries listed below
- ATAC-seq processing pipeline☆32Updated 3 years ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 5 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆64Updated 5 months ago
- Analysis of Paired-Tag datasets☆40Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 8 months ago
- Tutorial Website☆59Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆34Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆32Updated 10 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- ☆38Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- release version☆51Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- ☆24Updated 3 years ago
- ☆30Updated 6 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- ☆50Updated 6 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 3 weeks ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆25Updated 2 weeks ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆65Updated 2 weeks ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆23Updated 3 months ago
- Pipeline for Cut&Tag analysis☆20Updated last week
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago