Zhang-lab / ATAC-seq_QC_analysisLinks
Atac-seq QC matrix
☆20Updated last year
Alternatives and similar repositories for ATAC-seq_QC_analysis
Users that are interested in ATAC-seq_QC_analysis are comparing it to the libraries listed below
Sorting:
- ☆117Updated last year
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- release version☆54Updated 3 years ago
- Links to ATAC-seq analysis tools☆69Updated 4 years ago
- Basic workflow for ATAC-seq analysis☆83Updated last year
- ☆75Updated 4 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- ☆50Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Analysis of Paired-Tag datasets☆42Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- HiC uniform processing pipeline☆61Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Analysis pipeline for ATAC-seq data☆71Updated last year
- ☆88Updated last month