Zhang-lab / ATAC-seq_QC_analysisLinks
Atac-seq QC matrix
☆20Updated last year
Alternatives and similar repositories for ATAC-seq_QC_analysis
Users that are interested in ATAC-seq_QC_analysis are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- Basic workflow for ATAC-seq analysis☆82Updated last year
- Analysis of Paired-Tag datasets☆42Updated last year
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- ☆117Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- ATAC-seq snakemake pipeline☆89Updated 5 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆93Updated last month
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 4 years ago
- release version☆54Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated 2 weeks ago
- Tutorial Website☆59Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆113Updated this week
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- ☆86Updated 4 years ago
- SNV calling from single cell sequencing☆104Updated 8 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆63Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- ☆116Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆69Updated 8 months ago