nf-core / cutandrunLinks
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
☆98Updated last month
Alternatives and similar repositories for cutandrun
Users that are interested in cutandrun are comparing it to the libraries listed below
Sorting:
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆167Updated 9 months ago
- ☆95Updated last week
- Basic workflow for ATAC-seq analysis☆82Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- ☆63Updated last year
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆70Updated last year
- release version☆54Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆144Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆166Updated 3 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆28Updated 6 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- ☆137Updated 6 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆151Updated last year
- Links to ATAC-seq analysis tools☆69Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆222Updated 2 months ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated 3 weeks ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆258Updated 6 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆208Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month