nf-core / cutandrunLinks
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
☆91Updated last week
Alternatives and similar repositories for cutandrun
Users that are interested in cutandrun are comparing it to the libraries listed below
Sorting:
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆162Updated 7 months ago
- Analysis pipeline for ATAC-seq data☆60Updated last year
- Basic workflow for ATAC-seq analysis☆78Updated last year
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- ☆62Updated last year
- Publication quality NGS track plotting☆113Updated 2 years ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- ☆107Updated last year
- ☆136Updated 6 years ago
- ☆91Updated 2 weeks ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆142Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- ASCAT R package☆181Updated 2 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated last week
- ATAC-seq snakemake pipeline☆87Updated 5 years ago
- release version☆53Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated 4 months ago
- ☆93Updated 3 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆251Updated 4 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago