Alternatives and similar repositories for cutandrun

Users that are interested in cutandrun are comparing it to the libraries listed below

• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆109Updated 2 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆124Updated 2 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆81Updated last year
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆114Updated 3 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆164Updated 8 months ago
• xryanglab / RiboCode
  release version
  ☆54Updated 2 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆100Updated 8 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆115Updated 5 months ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆63Updated last year
• epi2me-labs / wf-single-cell
  ☆95Updated last week
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆163Updated last month
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆28Updated 5 months ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆62Updated last year
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆35Updated 2 years ago
• yupenghe / methylpy
  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
  ☆143Updated 2 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆192Updated 2 years ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆48Updated 6 years ago
• vaquerizaslab / fanc
  FAN-C: Framework for the ANalysis of C-like data
  ☆115Updated last year
• VanLoo-lab / ascat
  ASCAT R package
  ☆184Updated 3 months ago
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆68Updated 3 years ago
• harvardinformatics / ATAC-seq
  ☆138Updated 6 years ago
• virajbdeshpande / AmpliconArchitect
  AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …
  ☆147Updated last year
• Xinglab / rmats2sashimiplot
  ☆147Updated last month
• 10XGenomics / vartrix
  Single-Cell Genotyping Tool
  ☆209Updated last year
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆206Updated last week
• jernst98 / ChromHMM
  ☆87Updated last week
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆104Updated 8 months ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆89Updated 5 years ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆79Updated last week
• caleblareau / mgatk
  mgatk: mitochondrial genome analysis toolkit
  ☆108Updated 5 months ago