nf-core / cutandrunLinks
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
☆104Updated last week
Alternatives and similar repositories for cutandrun
Users that are interested in cutandrun are comparing it to the libraries listed below
Sorting:
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆118Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated this week
- Generate IGV style locus tracks from bigWig files in R☆174Updated last year
- Basic workflow for ATAC-seq analysis☆92Updated last year
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- ☆98Updated last week
- ☆63Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Detecting sites of genomic enrichment☆197Updated 2 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- release version☆54Updated 3 years ago
- FAN-C: Framework for the ANalysis of C-like data☆120Updated last year
- Publication quality NGS track plotting☆115Updated last month
- Links to ATAC-seq analysis tools☆73Updated 4 years ago
- Analysis pipeline for ATAC-seq data☆81Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆174Updated 3 weeks ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 10 months ago
- ASCAT R package☆192Updated 2 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆30Updated 3 weeks ago
- ☆144Updated 6 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated last month
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆104Updated 3 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆120Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago