Alternatives and similar repositories for pyCircos-examples

Users that are interested in pyCircos-examples are comparing it to the libraries listed below

• ShujiaHuang / qmplot
  A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
  ☆46Updated last year
• tsznxx / PyCircos
  Draw Circos in Python
  ☆31Updated 2 years ago
• Chrom3D / Chrom3D
  ☆51Updated 2 years ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆43Updated 9 months ago
• frankvogt / vcf2gwas
  Python API for comprehensive GWAS analysis using GEMMA
  ☆100Updated last year
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆22Updated 4 years ago
• jeremymcrae / liftover
  liftover for python, made fast with cython
  ☆89Updated 3 months ago
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆72Updated last year
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆85Updated 2 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• yuabrahamliu / CWGCNA
  CWGCNA is an R package to perform causal inference from the WGCNA framework.
  ☆17Updated 10 months ago
• ShujiaHuang / geneview
  Genomics data visualization in Python by using matplotlib.
  ☆66Updated last year
• cancer-genomics / reproduce_lucas_wflow
  ☆30Updated last year
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆47Updated 6 months ago
• ysora / stripenn
  Architectural stripe detection from 3D genome conformation data
  ☆18Updated 2 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆35Updated 3 years ago
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆27Updated 2 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆38Updated this week
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 4 months ago
• dvitale199 / GenoTools
  GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…
  ☆28Updated this week
• Searchlight2 / Searchlight2
  Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.
  ☆30Updated 11 months ago
• wangjr03 / FLAMINGO
  ☆19Updated last year
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆30Updated 2 weeks ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆65Updated 4 years ago
• YaCui / NG-Circos
  ☆32Updated 4 years ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆64Updated 11 months ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 8 months ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆30Updated 2 months ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆44Updated 3 years ago