ponnhide / pyCircos-examples
Example notebooks of pyCircos
☆29Updated 2 years ago
Alternatives and similar repositories for pyCircos-examples:
Users that are interested in pyCircos-examples are comparing it to the libraries listed below
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆42Updated last year
- Transcription Factor Enrichment Analysis☆33Updated 10 months ago
- Draw Circos in Python☆30Updated 2 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated 2 months ago
- ☆33Updated this week
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆37Updated 9 months ago
- ☆30Updated 3 years ago
- CWGCNA is an R package to perform causal inference from the WGCNA framework.☆14Updated 3 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated last week
- This is a read-only mirror of the CRAN R package repository. TOmicsVis — Transcriptome Visualization Process Scheme. Homepage: https://…☆15Updated last year
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆26Updated 5 months ago
- a minimal, scriptable genome browser for python☆49Updated 2 months ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆15Updated last month
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆38Updated 4 months ago
- Network annotation visualization☆17Updated 2 years ago
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆20Updated 4 years ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆25Updated 11 months ago
- Comprehensive analysis of small RNA sequencing data☆30Updated 8 months ago
- pathway based data integration and visualization☆40Updated 10 months ago
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆24Updated last month
- A python package and a set of shell commands to handle GTF files☆46Updated 8 months ago
- Python package to analyze DNA methylation data☆40Updated 3 months ago
- Proteome-Wide Association Study☆44Updated 3 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆57Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated 7 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆24Updated last month
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago