DeplanckeLab / ASAP
ASAP : Automated Single-cell Analysis Pipeline
☆26Updated 7 months ago
Alternatives and similar repositories for ASAP
Users that are interested in ASAP are comparing it to the libraries listed below
Sorting:
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- ☆53Updated 2 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 6 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- ☆34Updated 5 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 9 months ago
- ☆61Updated 4 years ago
- ATAC-seq lab for BIOINF545☆25Updated 2 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆43Updated 5 months ago
- ☆40Updated 7 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆44Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Statistical power studies for multi-omics experiments.☆31Updated 3 months ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆28Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆53Updated 8 months ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- Explore and download data from the recount3 project☆34Updated 5 months ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆30Updated 7 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year