ASAP : Automated Single-cell Analysis Pipeline
☆27Mar 10, 2026Updated last week
Alternatives and similar repositories for ASAP
Users that are interested in ASAP are comparing it to the libraries listed below
Sorting:
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆15Jan 14, 2018Updated 8 years ago
- ☆19Mar 6, 2019Updated 7 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Introduction to large scale computing and data wrangling with hands-on tutorials☆16Mar 13, 2026Updated last week
- a web-based R shiny application that wraps DESeq2 R package☆13Apr 19, 2020Updated 5 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- a tool for summarizing and integrating gene-set analysis results☆16Aug 14, 2024Updated last year
- The START App: R Shiny Transcriptome Analysis Resource Tool☆87Nov 11, 2020Updated 5 years ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 5 months ago
- Junction centric alternative splicing translator☆21Oct 31, 2022Updated 3 years ago
- Human Computer Interaction (SEN303) - TA Fatma Elsayed☆14Apr 22, 2024Updated last year
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Jul 22, 2019Updated 6 years ago
- A graphical interface for sklearn classification to introduce machine learning to biologists☆13Mar 19, 2025Updated last year
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆10Feb 16, 2026Updated last month
- Analysis of single cell RNA-Seq data from Veres et al.☆12Dec 10, 2019Updated 6 years ago
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- ☆27Jul 2, 2024Updated last year
- ATAC-seq Quality Control☆25Nov 5, 2025Updated 4 months ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆21Jun 12, 2023Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆27Mar 26, 2019Updated 6 years ago
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated last year
- Package for analysis and experimental design of multiplexed imaging data☆12Mar 3, 2025Updated last year
- an R/shiny application for creation of Circos plot interactively☆157Sep 25, 2022Updated 3 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 2 years ago
- ☆17Feb 16, 2024Updated 2 years ago
- MHC class II binding prediction☆14Dec 27, 2022Updated 3 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Mar 24, 2021Updated 4 years ago
- ☆10Aug 4, 2020Updated 5 years ago
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- Repository that contains all the data, code and manuscript files for a paper that explores the use of GAMs in biomedical research.☆22Jun 3, 2024Updated last year
- SODAR: System for Omics Data Access and Retrieval☆19Updated this week
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- claude-code full original source code from source maps☆19Mar 4, 2025Updated last year