Alternatives and similar repositories for atac-seq-pipeline

Users that are interested in atac-seq-pipeline are comparing it to the libraries listed below

• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆306Updated 2 years ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆465Updated last week
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆318Updated 2 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆308Updated 4 years ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆267Updated last year
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆405Updated last year
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆369Updated last week
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆341Updated 9 months ago
• hbctraining / Intro-to-DGE
  ☆196Updated 2 months ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆136Updated 2 years ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆324Updated this week
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆201Updated 3 weeks ago
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆411Updated 3 months ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆310Updated last month
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆215Updated 4 months ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆421Updated 3 months ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆614Updated 3 months ago
• hbctraining / DGE_workshop
  ☆392Updated 3 years ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆265Updated 2 years ago
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆215Updated 3 weeks ago
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆587Updated last week
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆431Updated 8 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆170Updated 4 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆802Updated 9 months ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆509Updated 3 months ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆540Updated this week
• Teichlab / cellphonedb
  ☆355Updated 3 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆214Updated last month
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆443Updated 4 years ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆280Updated 10 months ago