ENCODE-DCC / atac-seq-pipeline
ENCODE ATAC-seq pipeline
☆407Updated 8 months ago
Alternatives and similar repositories for atac-seq-pipeline:
Users that are interested in atac-seq-pipeline are comparing it to the libraries listed below
- Intro to ChIPseq using HPC☆300Updated 2 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆453Updated 3 months ago
- ENCODE ChIP-seq pipeline☆262Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆396Updated 11 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆314Updated last year
- Application for making ENCODE Blacklists☆295Updated 3 years ago
- ☆441Updated 4 years ago
- TCR and BCR assembly from RNA-seq data☆298Updated last week
- Table of software for the analysis of single-cell RNA-seq data.☆316Updated this week
- GTEx & TOPMed data production and analysis pipelines☆358Updated last month
- 10x Genomics Single Cell Analysis☆390Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- Inferring CNV from Single-Cell RNA-Seq☆599Updated last month
- ☆387Updated 3 years ago
- ☆192Updated this week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated 2 months ago
- A collection of tools for Hi-C data analysis☆571Updated last month
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆278Updated 8 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆407Updated last month
- RNA-seq workflow using STAR and DESeq2☆339Updated 7 months ago
- ChIP-seq analysis notes from Ming Tang☆781Updated 7 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆394Updated this week
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆207Updated last week
- A repository for setting up a RNAseq workflow☆428Updated 7 years ago
- Single cell RNA sequencing analysis course☆205Updated this week
- ☆353Updated 3 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆381Updated 3 months ago
- NicheNet: predict active ligand-target links between interacting cells☆522Updated 3 weeks ago
- Analysis of single cell RNA-seq data course☆132Updated 2 years ago