jernst98 / STEM_DREM
Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)
☆20Updated 4 years ago
Alternatives and similar repositories for STEM_DREM:
Users that are interested in STEM_DREM are comparing it to the libraries listed below
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- ☆21Updated 2 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ☆16Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- documentation for trackViewer☆29Updated 5 years ago
- workshop website on readthedocs☆19Updated 2 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- binned motif enrichment analysis and visualisation☆40Updated last month
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- ☆38Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 8 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- ☆40Updated 7 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Motif manipulation functions for R.☆28Updated this week
- ☆28Updated 9 months ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year