jernst98 / STEM_DREMLinks
Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)
☆20Updated 5 years ago
Alternatives and similar repositories for STEM_DREM
Users that are interested in STEM_DREM are comparing it to the libraries listed below
Sorting:
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- documentation for trackViewer☆29Updated 6 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆30Updated 5 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- DNA methylation analysis notes from Ming Tang☆87Updated 5 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 8 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆38Updated 2 years ago
- R package wrapping bedtools☆42Updated 5 months ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- An R for fast and flexible DNA methylation analysis☆33Updated last month
- chia pet analysis software☆25Updated 6 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 3 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Website for the precision medicine workshop☆45Updated last month
- binned motif enrichment analysis and visualisation☆41Updated last month
- RNA editing quantification in deep transcriptome data☆15Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week