jernst98 / STEM_DREM
Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)
☆20Updated 4 years ago
Alternatives and similar repositories for STEM_DREM:
Users that are interested in STEM_DREM are comparing it to the libraries listed below
- Differential ATAC-seq toolkit☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- R package for testing and visualizing gene list overlaps☆18Updated 8 years ago
- documentation for trackViewer☆29Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- ☆17Updated 3 years ago
- Motif manipulation functions for R.☆28Updated 3 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last month
- binned motif enrichment analysis and visualisation☆40Updated 3 weeks ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated this week
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- An R for fast and flexible DNA methylation analysis☆31Updated 6 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 2 years ago
- Summer school course materials collection☆25Updated 6 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Snakemake pipeline for running MAJIQ☆19Updated last year
- workshop website on readthedocs☆19Updated this week
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- ☆28Updated 7 months ago
- ☆9Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated this week
- ☆23Updated 3 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 2 years ago