jsh58 / DMRfinderLinks
Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
☆28Updated 2 years ago
Alternatives and similar repositories for DMRfinder
Users that are interested in DMRfinder are comparing it to the libraries listed below
Sorting:
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- ☆23Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆39Updated last year
- ☆30Updated 7 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 weeks ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆13Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- alternative splicing analysis pipeline☆19Updated 4 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- Micro DNA identification☆24Updated 4 years ago