kundajelab / coda
Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
☆33Updated 7 years ago
Alternatives and similar repositories for coda:
Users that are interested in coda are comparing it to the libraries listed below
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- ☆50Updated last year
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 6 months ago
- ☆47Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆28Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- BAGEL software☆27Updated last year
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆18Updated 7 years ago
- ☆36Updated 6 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆38Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- Explore the cancer relevance of your gene list☆50Updated 2 weeks ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆62Updated 3 years ago
- bradner lab computation pipeline scripts☆54Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics