kundajelab / codaLinks
Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
☆33Updated 7 years ago
Alternatives and similar repositories for coda
Users that are interested in coda are comparing it to the libraries listed below
Sorting:
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 4 months ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 9 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- BAGEL software☆27Updated last year
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- ☆34Updated 5 years ago
- ☆31Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- ☆48Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆31Updated 7 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 4 months ago
- ATAC-seq lab for BIOINF545☆25Updated 3 months ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Updated 7 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆29Updated 6 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆57Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 10 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 3 weeks ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago