ENCODE-DCC / chip-seq-pipeline2Links
ENCODE ChIP-seq pipeline
☆275Updated last year
Alternatives and similar repositories for chip-seq-pipeline2
Users that are interested in chip-seq-pipeline2 are comparing it to the libraries listed below
Sorting:
- Application for making ENCODE Blacklists☆327Updated 4 years ago
- Intro to ChIPseq using HPC☆316Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆213Updated this week
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆426Updated last year
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- ENCODE ATAC-seq pipeline☆434Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆230Updated 2 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆226Updated last month
- ☆279Updated 3 weeks ago
- RNA-seq workflow using STAR and DESeq2☆346Updated 2 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- GTEx & TOPMed data production and analysis pipelines☆386Updated 2 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- ☆143Updated 6 years ago
- ☆209Updated 3 months ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆284Updated last week
- ☆442Updated 5 years ago
- TCR and BCR assembly from RNA-seq data☆330Updated this week
- Collections of library structure and sequence of popular single cell genomic methods☆485Updated 5 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆267Updated last week
- Detecting sites of genomic enrichment☆196Updated 2 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆200Updated 4 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last week
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆434Updated 3 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆293Updated 2 years ago
- ☆157Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆528Updated 4 months ago