ENCODE-DCC / chip-seq-pipeline2Links
ENCODE ChIP-seq pipeline
☆278Updated last year
Alternatives and similar repositories for chip-seq-pipeline2
Users that are interested in chip-seq-pipeline2 are comparing it to the libraries listed below
Sorting:
- Intro to ChIPseq using HPC☆320Updated 3 years ago
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆290Updated last year
- ENCODE ATAC-seq pipeline☆446Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆430Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆230Updated 2 months ago
- GTEx & TOPMed data production and analysis pipelines☆394Updated 4 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated 2 months ago
- ☆145Updated 7 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆491Updated 8 months ago
- RNA-seq workflow using STAR and DESeq2☆351Updated last month
- ☆290Updated 3 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- parallel fastq-dump wrapper☆303Updated 2 years ago
- ☆444Updated 5 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆294Updated 3 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated 2 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Updated 3 months ago
- TCR and BCR assembly from RNA-seq data☆338Updated 2 weeks ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆409Updated 6 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated 2 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆338Updated this week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆300Updated 2 years ago
- ☆211Updated 5 months ago
- ☆408Updated 4 years ago
- Step-by-step analysis pipeline for RNA-seq data☆162Updated 2 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆536Updated last week
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆173Updated 4 years ago