cnio-bu / bollitoLinks
A single-cell RNA-seq pipeline
☆23Updated 2 years ago
Alternatives and similar repositories for bollito
Users that are interested in bollito are comparing it to the libraries listed below
Sorting:
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 2 weeks ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆54Updated last year
- ☆57Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆76Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Pan-Cancer Single Cell Classifier☆80Updated last year
- Code repository for single cell RNA-seq☆37Updated 5 years ago
- Easy and comprehensive biological network reconstruction and analysis☆32Updated last month
- ☆39Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆69Updated last month
- Unified access to several second-generation deconvolution methods☆79Updated 2 weeks ago
- R package for the analysis of single-cell immune repertoires☆43Updated 8 months ago
- ☆59Updated last year
- ☆87Updated last month
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- ☆19Updated 3 years ago
- ☆24Updated 2 years ago
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆30Updated 2 months ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Gene group activity utility functions for Scanpy☆92Updated 10 months ago