LiuLabUB / HMMRATACLinks
HMMRATAC peak caller for ATAC-seq data
☆100Updated 7 months ago
Alternatives and similar repositories for HMMRATAC
Users that are interested in HMMRATAC are comparing it to the libraries listed below
Sorting:
- Publication quality NGS track plotting☆113Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- ☆30Updated 6 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆69Updated last year
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆114Updated 4 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ATAC-seq snakemake pipeline☆89Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated 2 years ago
- ☆117Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 2 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago