LiuLabUB / HMMRATACLinks
HMMRATAC peak caller for ATAC-seq data
☆99Updated last year
Alternatives and similar repositories for HMMRATAC
Users that are interested in HMMRATAC are comparing it to the libraries listed below
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 10 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- Publication quality NGS track plotting☆116Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated this week
- nucleosome calling using ATAC-seq☆109Updated 4 years ago
- Links to ATAC-seq analysis tools☆73Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Tutorial Website☆60Updated 4 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆32Updated 7 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆56Updated 2 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆118Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 10 months ago
- ☆63Updated last year
- ☆81Updated 7 months ago
- Command-line tool for the visualization of splicing events across multiple samples☆134Updated last year
- ☆120Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆104Updated last week
- Generate IGV style locus tracks from bigWig files in R☆174Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆110Updated 4 years ago
- ☆72Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆104Updated 3 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆88Updated 10 months ago
- A tool for bigWig files.☆118Updated 7 years ago