Alternatives and similar repositories for ClusterDE

Users that are interested in ClusterDE are comparing it to the libraries listed below

• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆53Updated 11 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆85Updated 2 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆87Updated last month
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆53Updated 2 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆74Updated last year
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆35Updated 2 months ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆41Updated 3 years ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 2 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆37Updated last week
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 4 months ago
• Teichlab / sctk
  ☆40Updated last week
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆59Updated 3 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• ajaynadig / TRADEtools
  ☆29Updated 5 months ago
• Winnie09 / Lamian
  ☆55Updated last year
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆73Updated last week
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 5 years ago
• jyyulab / scMINER
  Single-cell Mutual Information-based Network Engineering Ranger
  ☆20Updated this week
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆84Updated 11 months ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 4 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 2 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 7 months ago
• scverse / anndataR
  AnnData interoperability in R
  ☆87Updated this week
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆25Updated last year
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆93Updated 8 months ago