SONGDONGYUAN1994 / ClusterDE

Related projects ⓘ

Alternatives and complementary repositories for ClusterDE

• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆31Updated last month
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆18Updated last year
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆26Updated 11 months ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 4 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆33Updated 3 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆59Updated 2 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆22Updated last year
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆13Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 8 months ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆12Updated 11 months ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆24Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆42Updated last month
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆22Updated 3 months ago
• lhe17 / nebula
  ☆29Updated 8 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆45Updated last month
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆64Updated 7 months ago
• scverse / anndataR
  AnnData interoperability in R
  ☆60Updated last week
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆27Updated last month
• PoolLab / generecovery
  ☆29Updated last year
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆24Updated 5 months ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆41Updated 3 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 5 months ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• GabrielHoffman / dreamlet
  Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
  ☆20Updated this week
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆38Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆37Updated 4 months ago