kjgaulton / pipelinesLinks
Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
☆27Updated 5 years ago
Alternatives and similar repositories for pipelines
Users that are interested in pipelines are comparing it to the libraries listed below
Sorting:
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 5 years ago
- ☆39Updated 4 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆12Updated 6 years ago
- ☆53Updated last year
- ☆25Updated 3 years ago
- ☆30Updated 4 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆48Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Network construction Algorithm☆22Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆58Updated 3 years ago
- ☆18Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated 3 weeks ago
- ☆32Updated 11 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated last year
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Updated 3 years ago
- ☆18Updated 2 years ago