Compressed, associative, and exact hash table for k-mers
β11Oct 15, 2026Updated last week
Alternatives and similar repositories for rshash
Users that are interested in rshash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Homology-based ANI estimation at unprecedented scalesπ¦β25Oct 4, 2026Updated 2 weeks ago
- Optimal distance lower bound k-mer sampling.β12Jun 19, 2024Updated 2 years ago
- Implementation of the u-indexβ12Jul 19, 2025Updated last year
- How many distinct k-mers are there in a sequence?β11Feb 4, 2026Updated 8 months ago
- β18Oct 12, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rust bindings to Intelligent Storage Acceleration Library (ISA-L)β15Feb 2, 2025Updated last year
- Fast sequence distance estimatesβ34Updated this week
- String algorithm visualizationsβ14Feb 7, 2023Updated 3 years ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graphβ12Sep 11, 2025Updated last year
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunstβ21Aug 10, 2026Updated 2 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLogβ23Updated this week
- Rust library for processing sequencing reads.β25Sep 2, 2024Updated 2 years ago
- Minimum plain text representation of kmer setsβ20Jan 30, 2025Updated last year
- A SIMD-accelerated library to compute random minimizersβ49Oct 2, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementations of syncmer-based long read mappersβ10Mar 8, 2024Updated 2 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoringβ14May 29, 2026Updated 4 months ago
- Build phylogenomic datasets in secondsβ15Sep 23, 2026Updated 3 weeks ago
- Hierarchical binned indexed data store for on-disk genomic data.β13Jan 18, 2025Updated last year
- Fast and haplotype-aware assemblerβ16Updated this week
- 2bit file format implementation in Rustβ16Mar 27, 2026Updated 6 months ago
- Bitpacked sequence trait and implementationβ19Oct 4, 2026Updated 2 weeks ago
- Pairwise nucleotide alignment benchmark of Rust bindingsβ32Jul 27, 2023Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high localityβ47May 13, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- De Bruijn graph construction for large k.β17Aug 31, 2021Updated 5 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.β44Nov 18, 2023Updated 2 years ago
- Parallel Construction of Suffix Arrays in Rustβ26Oct 14, 2026Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.β29Jul 12, 2026Updated 3 months ago
- β17Apr 6, 2023Updated 3 years ago
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.β18Apr 1, 2026Updated 6 months ago
- plane sweep filtering genome alignmentsβ24Sep 28, 2026Updated 3 weeks ago
- β28Jun 16, 2026Updated 4 months ago
- Iterate over minimizers of a DNA sequenceβ34Jul 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- β30Aug 2, 2026Updated 2 months ago
- Metax: Accurate Cross-Domain Taxon Profiling via a Probabilistic Model of Genome Coverageβ35Oct 12, 2026Updated last week
- A small, auxiliary index to massively improve parallel fastq parsingβ32Mar 6, 2026Updated 7 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processingβ50Sep 30, 2026Updated 3 weeks ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomesβ46Mar 9, 2026Updated 7 months ago
- Mapping sequencing data to De Bruijn graphs, fastβ38Updated this week
- Fast Approximate Pattern Matching using Search Schemesβ20Jul 11, 2026Updated 3 months ago