An extensible and performant aligner and read mapper
☆107Sep 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for rammap
Users that are interested in rammap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tearing through FASTA/Q sequences☆41Jul 9, 2026Updated 3 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Updated this week
- Fast approximate string searching☆169Sep 27, 2026Updated last week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Sep 30, 2026Updated last week
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Successor of bwa-mem for short-read alignment☆352Oct 1, 2026Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Oct 1, 2026Updated last week
- A SIMD-accelerated library to compute random minimizers☆48Oct 2, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated 3 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated 3 weeks ago
- Fast sequence distance estimates☆34Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- Fast DNA search and [host] depletion using minimizers☆127Oct 2, 2026Updated last week
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 9 months ago
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- ☆27Jun 16, 2026Updated 3 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated last month
- Ultra-rapid detection of viral variants directly from sequencing data☆48Sep 16, 2026Updated 3 weeks ago
- Local alignment search with k-bounded matching statistics.☆24Sep 16, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 6 months ago
- Creating alignment plots from bam files☆136Updated this week
- Bitpacked sequence trait and implementation☆19Updated this week
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated last month
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated last month
- ☆20Sep 16, 2026Updated 3 weeks ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Updated this week
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆64Oct 2, 2026Updated last week
- Split k-mer analysis – version 2☆106Updated this week
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆101Jan 28, 2026Updated 8 months ago
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated last month