mbhall88 / rasusaLinks
Randomly subsample sequencing reads or alignments
☆248Updated this week
Alternatives and similar repositories for rasusa
Users that are interested in rasusa are comparing it to the libraries listed below
Sorting:
- ☆220Updated last week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆163Updated this week
- A bioinformatics tool for working with modified bases☆233Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Nanopore data assembler☆162Updated 3 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆200Updated 3 months ago
- snipit: summarise snps relative to your reference sequence☆162Updated 2 months ago
- De novo genome assembler for long uncorrected reads☆228Updated 2 years ago
- k-mer based assembly evaluation☆333Updated last year
- A genome completeness evaluation tool based on miniprot☆230Updated 2 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆242Updated last year
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆208Updated 2 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆235Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- Long read / genome alignment software☆311Updated last year
- a long read simulator that can imitate many types of read problems☆252Updated last year
- ☆226Updated 10 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆231Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆152Updated this week
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 7 months ago
- Pairwise whole genome aligner☆222Updated last week
- Create a tree using Mash distances☆177Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆196Updated 2 months ago
- oxford dot plots☆161Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago