mbhall88 / rasusaLinks
Randomly subsample sequencing reads or alignments
☆232Updated last week
Alternatives and similar repositories for rasusa
Users that are interested in rasusa are comparing it to the libraries listed below
Sorting:
- ☆200Updated 2 months ago
- a long read simulator that can imitate many types of read problems☆228Updated 11 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆170Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆193Updated last week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆233Updated 11 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆155Updated last month
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- Filtering and trimming of long read sequencing data☆207Updated 2 years ago
- Nanopore data assembler☆157Updated 3 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆222Updated last month
- Ultra-fast preprocessing and quality control for long-read sequencing data☆162Updated last week
- a short-read polishing tool for long-read assemblies☆172Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆281Updated 9 months ago
- diploid SNV caller for error-prone reads☆202Updated last year
- k-mer based assembly evaluation☆317Updated last year
- A genome completeness evaluation tool based on miniprot☆216Updated 2 months ago
- A tool to circularize genome assemblies☆243Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆313Updated 3 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆191Updated 2 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆234Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆225Updated last year
- Long read / genome alignment software☆291Updated 8 months ago
- haplotypic duplication identification tool☆249Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- A bioinformatics tool for working with modified bases☆204Updated this week
- Quality control for MinION sequencing data☆217Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆165Updated last month