mbhall88 / rasusa
Randomly subsample sequencing reads or alignments
☆211Updated last month
Related projects ⓘ
Alternatives and complementary repositories for rasusa
- base-accurate DNA sequence alignments using WFA and mashmap3☆176Updated this week
- Fast and accurately polish the genome generated by long reads.☆213Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆146Updated 11 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆191Updated 2 months ago
- ☆150Updated last month
- Nanopore data assembler☆135Updated 2 years ago
- Filtering and trimming of long read sequencing data☆189Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆127Updated this week
- Find, circularise and annotate mitogenome from PacBio assemblies☆169Updated 3 months ago
- A bioinformatics tool for working with modified bases☆140Updated last month
- a long read simulator that can imitate many types of read problems☆171Updated 3 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆210Updated 2 months ago
- haplotypic duplication identification tool☆209Updated 10 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- a short-read polishing tool for long-read assemblies☆145Updated 5 months ago
- Constructing a pangenome gene graph☆174Updated 3 months ago
- k-mer based assembly evaluation☆283Updated 4 months ago
- Comparison of multiple long read datasets☆103Updated this week
- oxford dot plots☆133Updated last month
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆267Updated 3 weeks ago
- Long read / genome alignment software☆257Updated this week
- Pairwise whole genome aligner☆136Updated this week
- Create a tree using Mash distances☆156Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆282Updated last week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆129Updated last week
- Hierarchical Alignment Format☆163Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆169Updated 3 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆92Updated 2 years ago