Randomly subsample sequencing reads or alignments
☆255Mar 28, 2026Updated this week
Alternatives and similar repositories for rasusa
Users that are interested in rasusa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 3 weeks ago
- Minimal but speedy quality control for nanopore reads in Rust☆137Sep 16, 2024Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- Create a tree using Mash distances☆184Oct 24, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Remove human reads from a sequencing run☆48Mar 9, 2026Updated 3 weeks ago
- Precise host read removal☆119Updated this week
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 2 months ago
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- Split k-mer analysis – version 2☆104Updated this week
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Extract subsets of ONT (Nanopore) reads based on time☆23Sep 12, 2024Updated last year
- ☆246Mar 2, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- Align proteins to genomes with splicing and frameshift☆396Jan 5, 2026Updated 2 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Mar 13, 2026Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 11 months ago
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Rust bindings to minimap2 library☆109Mar 2, 2026Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Fast FASTX parsing and k-mer methods in Rust☆210Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆245Oct 12, 2025Updated 5 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆242Feb 3, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Mar 20, 2026Updated last week
- Submit slurm sbatch jobs without a script☆74Aug 7, 2025Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆224Feb 23, 2026Updated last month
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated 2 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆225Sep 6, 2025Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Plasmid analysis using rearrangement distances☆50Mar 23, 2026Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 6 months ago
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆176Mar 2, 2026Updated 3 weeks ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Mar 23, 2026Updated last week
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated 2 weeks ago
- seqfu - Sequece Fastx Utilities☆126Mar 3, 2026Updated 3 weeks ago