ManchesterBioinference / GPcountsLinks
Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
☆22Updated 6 months ago
Alternatives and similar repositories for GPcounts
Users that are interested in GPcounts are comparing it to the libraries listed below
Sorting:
- Spatial reconstruction of dissociated single-cell data☆19Updated last year
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated last year
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆11Updated last year
- Global Waddington-OT☆24Updated 5 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 11 months ago
- Test genes for Spatial Variation☆14Updated 8 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆28Updated 2 years ago
- ☆21Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆41Updated 2 years ago
- Simple scVI implementation☆12Updated 2 weeks ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- ☆26Updated last year
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated last month
- ☆45Updated last month
- spatial transcriptome, single cell☆69Updated 2 years ago
- ☆40Updated last week
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆21Updated 5 months ago
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆30Updated 5 months ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆23Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 11 months ago
- Conditional out-of-distribution prediction☆63Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 9 months ago
- ☆16Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year