Alternatives and similar repositories for GPcounts

Users that are interested in GPcounts are comparing it to the libraries listed below

• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆62Updated 2 years ago
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆20Updated last year
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆28Updated 4 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆43Updated 2 years ago
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆31Updated 3 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 10 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• scverse / simple-scvi
  Simple scVI implementation
  ☆12Updated 2 weeks ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆15Updated last year
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆19Updated last year
• theislab / inVAE
  Invariant Representation learning
  ☆18Updated last year
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆13Updated last year
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• CostaLab / PILOT
  Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
  ☆25Updated 3 months ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆17Updated last year
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• YosefLab / velovi
  ☆41Updated 2 weeks ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated 8 months ago
• AllonKleinLab / cospar
  ☆26Updated 2 years ago
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• cliffzhou92 / MuTrans-release
  ☆17Updated 4 years ago
• bioFAM / FISHFactor
  A probabilistic factor model for spatial transcriptomics data with subcellular resolution
  ☆25Updated 2 years ago
• zcang / SpaOTsc
  ☆47Updated 6 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 3 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆62Updated last year