Alternatives and similar repositories for PILOT

Users that are interested in PILOT are comparing it to the libraries listed below

• theislab / moslin
  Code, data and analysis for moslin.
  ☆14Updated 10 months ago
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 3 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated 2 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 11 months ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆12Updated 10 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆32Updated 4 months ago
• jranek / delve
  Feature selection for preserving biological trajectories in single-cell data
  ☆19Updated 2 months ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 9 months ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 2 years ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆16Updated 8 months ago
• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆12Updated 2 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆20Updated 2 months ago
• stevexniu / spots
  Statistical analysis for spatial omics data
  ☆10Updated 3 years ago
• AllonKleinLab / cospar
  ☆26Updated last year
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆58Updated 2 months ago
• MarioniLab / oor_design_reproducibility
  ☆16Updated last year
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 2 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆15Updated last year
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 5 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 5 months ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 4 years ago
• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 4 months ago
• Teichlab / sctk
  ☆40Updated last week
• wanglab-broad / CAST
  CAST package
  ☆40Updated 9 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 7 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated 9 months ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated last month
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆26Updated 2 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆35Updated 2 months ago