Fully convolutional deep learning variant effect predictor architecture
☆23Jan 3, 2024Updated 2 years ago
Alternatives and similar repositories for sequence_unet
Users that are interested in sequence_unet are comparing it to the libraries listed below
Sorting:
- scover☆24Nov 3, 2023Updated 2 years ago
- ☆14Jul 14, 2023Updated 2 years ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 3 years ago
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated last year
- ☆12Dec 2, 2024Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆12Apr 8, 2021Updated 4 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- ☆42Aug 29, 2025Updated 6 months ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Aug 7, 2023Updated 2 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆68Sep 13, 2022Updated 3 years ago
- Cross-protein transfer learning for variant effect prediction☆20Sep 13, 2023Updated 2 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆31Updated this week
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 6 years ago
- Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH☆10Oct 31, 2016Updated 9 years ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Oct 14, 2025Updated 5 months ago
- Sandbox for Deep-Learning based Computational Protein Design☆119Dec 11, 2025Updated 3 months ago
- Source files for the SmartRoot software. Website: https://smartroot.github.io/☆16Jun 28, 2022Updated 3 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 3 months ago
- Sequence-to-function deep learning frameworks for engineered riboregulators☆14Aug 3, 2023Updated 2 years ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 5 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Jan 16, 2025Updated last year
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- ☆10Aug 29, 2012Updated 13 years ago
- Protein design and variant prediction using autoregressive generative models☆119Jan 23, 2024Updated 2 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Apr 20, 2022Updated 3 years ago
- small R projects☆20May 1, 2022Updated 3 years ago
- Code for ColabDock paper☆152May 1, 2025Updated 10 months ago
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Jan 2, 2023Updated 3 years ago
- Analysis tools for SLEAP-based plant root phenotyping.☆13Feb 13, 2026Updated last month
- ☆16May 22, 2023Updated 2 years ago
- Deep learning based prediction of temperature dependent enzyme turnover rates☆17Nov 24, 2024Updated last year
- A toolset to analyze genomic footprinting data☆20Dec 5, 2025Updated 3 months ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆37Feb 17, 2022Updated 4 years ago
- Probabilistic Graphical Models in Python3.☆24Jun 4, 2025Updated 9 months ago