allydunham / sequence_unet
Fully convolutional deep learning variant effect predictor architecture
☆23Updated last year
Alternatives and similar repositories for sequence_unet:
Users that are interested in sequence_unet are comparing it to the libraries listed below
- Feature map and function annotation of Proteins☆31Updated 8 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆24Updated last year
- ☆33Updated last month
- Fast protein domain structure embedding+search tool☆12Updated last month
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- Diverse Genomic Embedding Benchmark☆39Updated 4 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Cross-protein transfer learning for variant effect prediction☆19Updated last year
- ☆65Updated 4 months ago
- Detection of remote homology by comparison of protein language model representations☆47Updated 2 months ago
- DeepECtransformer☆23Updated last year
- ☆72Updated last year
- Code for LazyAF pipeline☆21Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆34Updated 3 months ago
- ☆20Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 11 months ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- Transmembrane proteins predicted through Language Model embeddings☆33Updated 3 weeks ago
- ☆22Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 10 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆30Updated 2 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated last month
- ☆57Updated 4 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆36Updated 2 months ago
- ☆29Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆34Updated 5 months ago
- Evolutionary conservation estimation of residues or nucleotides☆34Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆45Updated 6 months ago
- Protein Sequence Annotation with Language Models☆19Updated 3 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago