Differential expression and allelic analysis, nonparametric statistics
☆32Jan 3, 2025Updated last year
Alternatives and similar repositories for fishpond
Users that are interested in fishpond are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- Mapping sequencing data to De Bruijn graphs, fast☆37Updated this week
- ☆17Jan 6, 2025Updated last year
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆21May 24, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Introduction to Computational Biology☆34Updated this week
- ☆19Aug 15, 2026Updated 3 weeks ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆40Jul 7, 2026Updated last month
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆136Apr 10, 2026Updated 4 months ago
- Transcript quantification import with automatic metadata detection☆72Jul 20, 2026Updated last month
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 6 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆14Jul 21, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Dec 1, 2021Updated 4 years ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 9 years ago
- Research Software Design by Example☆13Sep 7, 2025Updated last year
- team lander github repo☆10Aug 7, 2021Updated 5 years ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆216Updated this week
- Run any CLI tool on a Reproducible Isolated Environment ⚙️⚡☆15Aug 28, 2026Updated last week
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 11 months ago
- ☆19May 5, 2020Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Introduction to Computational Biology - source Rmarkdown files☆69Updated this week
- ☆58Aug 11, 2022Updated 4 years ago
- scover☆23Nov 3, 2023Updated 2 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- Associate pathways + gene ontologies with significant genes.☆10Jun 5, 2023Updated 3 years ago
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 3 years ago
- UNC-Chapel Hill Bioinformatics Utilities☆24Oct 29, 2015Updated 10 years ago
- Create QC and summary reports for Alevin output☆31Jul 21, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- ☆32Jun 23, 2026Updated 2 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Feb 14, 2026Updated 6 months ago
- Brings SummarizedExperiment to the tidyverse☆31Aug 21, 2026Updated 2 weeks ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 4 years ago