thelovelab / fishpondLinks
Differential expression and allelic analysis, nonparametric statistics
☆30Updated 10 months ago
Alternatives and similar repositories for fishpond
Users that are interested in fishpond are comparing it to the libraries listed below
Sorting:
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated last week
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- A tidy interface for coverage analysis☆31Updated 5 years ago
- interactive plots for differential expression analysis☆34Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- R package wrapping bedtools☆44Updated 8 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- An R for fast and flexible DNA methylation analysis☆34Updated last month
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 7 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- An R interface to the MEME Suite☆53Updated 5 months ago
- ☆22Updated 3 weeks ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 10 months ago
- Genomic plot in trellis layout☆41Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆93Updated 2 weeks ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Read HOMER motif analysis output in R.☆17Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago