BradBalderson / CytocipherLinks
Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expression.
☆38Updated 2 years ago
Alternatives and similar repositories for Cytocipher
Users that are interested in Cytocipher are comparing it to the libraries listed below
Sorting:
- ☆32Updated 9 months ago
- ☆51Updated last year
- ☆39Updated 2 months ago
- ☆20Updated 2 years ago
- R package for analysing single cell data☆59Updated 2 years ago
- ☆39Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- ☆29Updated 2 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 3 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆24Updated 6 months ago
- Network construction Algorithm☆22Updated last year
- scWGCNA☆61Updated 3 years ago
- ☆32Updated 8 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated 3 weeks ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆43Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last week
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 months ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆24Updated last month