BradBalderson / CytocipherLinks
Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expression.
☆39Updated 2 years ago
Alternatives and similar repositories for Cytocipher
Users that are interested in Cytocipher are comparing it to the libraries listed below
Sorting:
- ☆54Updated last year
- ☆33Updated last year
- ☆20Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- ☆40Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- scWGCNA☆61Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 6 months ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- ☆29Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Updated last week
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆25Updated 7 months ago
- ☆48Updated 2 months ago
- ☆39Updated 4 years ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Network construction Algorithm☆22Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆29Updated this week
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆20Updated 3 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated 2 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated last week