BradBalderson / Cytocipher
Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expression.
☆37Updated last year
Alternatives and similar repositories for Cytocipher:
Users that are interested in Cytocipher are comparing it to the libraries listed below
- scWGCNA☆59Updated 2 years ago
- ☆30Updated 3 months ago
- ☆41Updated last month
- ☆29Updated 2 years ago
- ☆49Updated 9 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆76Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- ☆20Updated last year
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆37Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 6 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated this week
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Removing empty droplets in multiome datasets☆16Updated 11 months ago
- ☆40Updated 4 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- ☆40Updated 5 months ago
- ☆33Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- R package for analysing single cell data☆55Updated 2 years ago