BradBalderson / CytocipherLinks
Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expression.
☆38Updated 2 years ago
Alternatives and similar repositories for Cytocipher
Users that are interested in Cytocipher are comparing it to the libraries listed below
Sorting:
- ☆32Updated 9 months ago
- ☆39Updated last month
- ☆51Updated last year
- scWGCNA☆61Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆24Updated 3 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Updated 6 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆29Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- Network construction Algorithm☆22Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- ☆23Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆20Updated 2 years ago
- ☆47Updated 9 months ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 2 months ago
- ☆39Updated 4 years ago
- ☆41Updated 2 months ago
- ☆37Updated 7 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Single-cell Case Control Analysis☆52Updated this week
- .h5mu files interface for Seurat☆31Updated last year