Alternatives and similar repositories for scSTEM

Users that are interested in scSTEM are comparing it to the libraries listed below

• soumelis-lab / ICELLNET
  ☆21Updated 5 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆14Updated last year
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆13Updated 5 months ago
• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆12Updated last year
• DavisLaboratory / scDECAF
  Querying cellular states and programs by learning representations of gene sets
  ☆14Updated last month
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆21Updated 2 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 9 months ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆30Updated 2 years ago
• federicogiorgi / corto
  corto (Correlation Tool): an R package to generate correlation-based DPI networks
  ☆20Updated 2 years ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆37Updated 3 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• satijalab / Mixscale
  ☆23Updated 2 months ago
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 3 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆21Updated 5 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆42Updated last year
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆15Updated last year
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆26Updated 2 years ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 3 months ago
• wuaipinglab / scImmuCC
  Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
  ☆10Updated last year
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 9 months ago
• ludvigla / STUtility_web_site
  ☆15Updated 3 years ago
• compbioNJU / CellFunTopic
  Functional Annotation for Single-Cell Transcriptomics
  ☆11Updated last year
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated 2 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year