Alternatives and similar repositories for scSTEM

Users that are interested in scSTEM are comparing it to the libraries listed below

• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• soumelis-lab / ICELLNET
  ☆20Updated 3 months ago
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆10Updated 2 months ago
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆20Updated this week
• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆12Updated last year
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆20Updated 5 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 7 months ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆29Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 7 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated last month
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆14Updated last year
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆34Updated 4 months ago
• msraredon / Connectome
  ☆29Updated 3 years ago
• compbioNJU / CellFunTopic
  Functional Annotation for Single-Cell Transcriptomics
  ☆11Updated last year
• federicogiorgi / corto
  corto (Correlation Tool): an R package to generate correlation-based DPI networks
  ☆20Updated 2 years ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆43Updated last year
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆55Updated 2 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆41Updated last year
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated last year
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 5 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated 11 months ago
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated last month
• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated 3 months ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆26Updated 2 years ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 11 months ago
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆26Updated last year
• saezlab / MOFAcellulaR
  R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
  ☆11Updated 2 years ago
• sdentro / copykat_pipeline
  ☆13Updated last year