canzarlab / JVis-learnLinks
☆20Updated 4 years ago
Alternatives and similar repositories for JVis-learn
Users that are interested in JVis-learn are comparing it to the libraries listed below
Sorting:
- Variant impact phenotyping using Perturb-seq☆9Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆14Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆16Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- ☆27Updated last year
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆35Updated last week
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- Finding the causality in biological pathways☆13Updated 2 years ago
- Code and example of the D-SPIN framework☆23Updated last month
- A Python package for gene network analysis☆32Updated 3 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- ☆15Updated last year
- ☆12Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆42Updated last week
- Summary statistics for repertoires☆17Updated 2 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- HiDeF (Hierarchical community Decoding Framework)☆14Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago