canzarlab / JVis-learn
☆20Updated 3 years ago
Alternatives and similar repositories for JVis-learn:
Users that are interested in JVis-learn are comparing it to the libraries listed below
- Marker Selection by matching manifolds and elastic net☆23Updated 5 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆15Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Test genes for Spatial Variation☆14Updated 3 months ago
- ☆19Updated 3 years ago
- ☆26Updated 6 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- ☆12Updated last year
- ☆25Updated 6 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆27Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆16Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- A statistical simulator for rational scRNA-seq experimental design☆11Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated 3 weeks ago
- Variant impact phenotyping using Perturb-seq☆9Updated 11 months ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- ☆25Updated 5 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated last year
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 7 months ago
- ☆26Updated last year
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆53Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago